PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11574.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB

Protein Properties

Length: 1817aa MW: 199200 Da PI: 5.4697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11574.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.6e-09	805	846	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ d + G++ +k+Ia+ + ++t +c+++++k PK11574.1 805 PWTPEEKEIFMDKLASCGKD-FKKIASFLD-HKTTADCVEFYYK 846 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33	1.4e-10	1022	1062	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++v+av+ +G + +++I++++ R++ qck ++ PK11574.1 1022 DWTDEEKAIFVQAVTSYGRD-FAKISQCVR-SRSRDQCKVFFS 1062 5***************77.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-13	789	850	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-6	798	850	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.321	801	852	IPR017884	SANT domain
SMART	SM00717	1.5E-8	802	850	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-7	804	846	IPR001005	SANT/Myb domain
CDD	cd00167	7.90E-7	805	847	No hit	No description
PROSITE profile	PS51293	10.864	1018	1069	IPR017884	SANT domain
SMART	SM00717	8.4E-9	1019	1067	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-10	1020	1069	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-6	1022	1063	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-8	1022	1062	IPR001005	SANT/Myb domain
CDD	cd00167	5.52E-7	1023	1061	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1817 aa Download sequence Send to blast
MPPEPLPWDR KDFFRERKQE RSESLGSVAR WRDSSHHGSR ELNRWGSTDF RRPLGHGKQG 60 GWRFFSEVPG HGYASRSSEK VLEDDGFRPS NSRGEGKYGR SSRENRGSYN QREWRGHTWE 120 TNNGFPSTPG RVHDMNNEQK SREDLPPYSP YSNGSFGNTW DQAQFKDQHE KAGGSMGLGT 180 AQRCDRKHSL GINDWKPMKW TRSGSLSSRG SGFSHLSCSK TTGAVDSIDT KVESQMKNAT 240 PVQSPSADAN ACVASSAPSE EMTSRKKPRL GWGEGLAKYE KKKVEVPEVT FNRDGVFAVS 300 NAEPSHSLSS SLIDKSPRVT SFSDCASPAT PSSVACSSSP GVEEKSFGKA VSIDNDGSNL 360 CGSPGPVSLN HGPVSLNHSE GFSFNLEKMD SNSISTLGSS LVELLQSDYP SSVDSTYVRS 420 TAINKLLIWK AEISKTLEVT ETEIDSLENE LKSLKSITIG SSPSVSCSLP AEDRLISSEE 480 EVITHLVPRP ALLQIRSTDD AVAEELPISN SDKEEACANV KAEDVDSPGT VTSKFVEPLS 540 LAKAVSSSDL LNHATGNSDG IPSTNQDVQH SVPGSGGEET VPDTYEDCSM LTEGEITAPI 600 IDTLGSCTDG EVKLQSVILS SNKELAKGAH DVFNKLLPQN EFSLDSSEGL NASSQQDYTL 660 VKEKFLMRKQ FKRFKERVIT LKFRAFQSLW KEDMRLLSIR KHRAKSQKKL ELSLRSVHNG 720 YQKHRSSIRS RFSSPGNLSL VPTAEVVNFT SKLLLDSQVK LHRNNLKMPA LILDEREKIV 780 SRFISNNGLV EDPCVVEKER AMINPWTPEE KEIFMDKLAS CGKDFKKIAS FLDHKTTADC 840 VEFYYKNHKS DSFEKKKKLD CGKQVKSLAN ATYLKLNKKW NREMNAASLD ILDVASVMAA 900 NADDCMRNQK ACSGRLIFGG LSESKASRGD YGTDERSSSI DIVGNDRETF AADILAGLCG 960 SLSSEAMSSC ITSSVDPVEG YREWRSQKVD SVVRRPLTPD VTQYVDDGTC SDESCGEMDP 1020 TDWTDEEKAI FVQAVTSYGR DFAKISQCVR SRSRDQCKVF FSKARKCLGL DLIHPGPENE 1080 RTFTGDDANG SGSGSENVCA REMGSGICSD KSGSKMDEDL PLSAVKMKND ETDPAENFTS 1140 LTAQSRSEGK NEREQLNSKR NIDASESQLS DSCPTQSRPN VVSDGDSKRN IDVQSRLEEK 1200 NGREQLSSKR NIGASETQES RPNVVSDGDS KRNIDASESQ ESRPNVVSDG DSIITQGVGE 1260 AKVIPIQETL PVLSSIDTGR DDGDEQGTSV AELESVSEGN ENDKLFNTES VVGKKPVDEV 1320 SSDELANLMD RLDEKCNAST SGQSGLDSVV QDSNSTGNAS HMTSDRNSCS GFSLNPDYQR 1380 QVSIELNSKE KSCVIPLAQE IPLVSANSIS LNSGAIRCEK NGNEDKMSSS LDFQESRDVC 1440 HISVCKDESN AHVTGLPILT DAQSSQVLRA CPVRMNVKVE VNGDVRCRNS SEVQGLSSSE 1500 TSSNASLLQN CYLQRCSNVN PSCSTTQFPL MSQNTEQASD RRKSRSQSLS DSEKPSRIGG 1560 DVKLFGKILT APSLPKADSN YRDNEENEGS NNHKLSNQSN MKFANLHNSD GNSTLLNFDH 1620 KNYLGIENVQ MRNYSYWDGN RLQATFPSVP DSAILLAKYP AAFSNFSAPS STMEQQSLQS 1680 VVNSNELDVN GVSAYPTREI SNSKGMVDYQ VYRSREAAKV QPFTVDVNQR QDMFSEVQRR 1740 NGIETISSFQ HQGRGMVGIN VLGRGGIVVG GGCTTGVTDP VVALKRHFAK TEQQYGGQSS 1800 SIIREDESWR GNGDMSR

Sequence ? help Back to Top

Protein Sequence Length: 1817 aa Download sequence Send to blast

MPPEPLPWDR KDFFRERKQE RSESLGSVAR WRDSSHHGSR ELNRWGSTDF RRPLGHGKQG  60
GWRFFSEVPG HGYASRSSEK VLEDDGFRPS NSRGEGKYGR SSRENRGSYN QREWRGHTWE  120
TNNGFPSTPG RVHDMNNEQK SREDLPPYSP YSNGSFGNTW DQAQFKDQHE KAGGSMGLGT  180
AQRCDRKHSL GINDWKPMKW TRSGSLSSRG SGFSHLSCSK TTGAVDSIDT KVESQMKNAT  240
PVQSPSADAN ACVASSAPSE EMTSRKKPRL GWGEGLAKYE KKKVEVPEVT FNRDGVFAVS  300
NAEPSHSLSS SLIDKSPRVT SFSDCASPAT PSSVACSSSP GVEEKSFGKA VSIDNDGSNL  360
CGSPGPVSLN HGPVSLNHSE GFSFNLEKMD SNSISTLGSS LVELLQSDYP SSVDSTYVRS  420
TAINKLLIWK AEISKTLEVT ETEIDSLENE LKSLKSITIG SSPSVSCSLP AEDRLISSEE  480
EVITHLVPRP ALLQIRSTDD AVAEELPISN SDKEEACANV KAEDVDSPGT VTSKFVEPLS  540
LAKAVSSSDL LNHATGNSDG IPSTNQDVQH SVPGSGGEET VPDTYEDCSM LTEGEITAPI  600
IDTLGSCTDG EVKLQSVILS SNKELAKGAH DVFNKLLPQN EFSLDSSEGL NASSQQDYTL  660
VKEKFLMRKQ FKRFKERVIT LKFRAFQSLW KEDMRLLSIR KHRAKSQKKL ELSLRSVHNG  720
YQKHRSSIRS RFSSPGNLSL VPTAEVVNFT SKLLLDSQVK LHRNNLKMPA LILDEREKIV  780
SRFISNNGLV EDPCVVEKER AMINPWTPEE KEIFMDKLAS CGKDFKKIAS FLDHKTTADC  840
VEFYYKNHKS DSFEKKKKLD CGKQVKSLAN ATYLKLNKKW NREMNAASLD ILDVASVMAA  900
NADDCMRNQK ACSGRLIFGG LSESKASRGD YGTDERSSSI DIVGNDRETF AADILAGLCG  960
SLSSEAMSSC ITSSVDPVEG YREWRSQKVD SVVRRPLTPD VTQYVDDGTC SDESCGEMDP  1020
TDWTDEEKAI FVQAVTSYGR DFAKISQCVR SRSRDQCKVF FSKARKCLGL DLIHPGPENE  1080
RTFTGDDANG SGSGSENVCA REMGSGICSD KSGSKMDEDL PLSAVKMKND ETDPAENFTS  1140
LTAQSRSEGK NEREQLNSKR NIDASESQLS DSCPTQSRPN VVSDGDSKRN IDVQSRLEEK  1200
NGREQLSSKR NIGASETQES RPNVVSDGDS KRNIDASESQ ESRPNVVSDG DSIITQGVGE  1260
AKVIPIQETL PVLSSIDTGR DDGDEQGTSV AELESVSEGN ENDKLFNTES VVGKKPVDEV  1320
SSDELANLMD RLDEKCNAST SGQSGLDSVV QDSNSTGNAS HMTSDRNSCS GFSLNPDYQR  1380
QVSIELNSKE KSCVIPLAQE IPLVSANSIS LNSGAIRCEK NGNEDKMSSS LDFQESRDVC  1440
HISVCKDESN AHVTGLPILT DAQSSQVLRA CPVRMNVKVE VNGDVRCRNS SEVQGLSSSE  1500
TSSNASLLQN CYLQRCSNVN PSCSTTQFPL MSQNTEQASD RRKSRSQSLS DSEKPSRIGG  1560
DVKLFGKILT APSLPKADSN YRDNEENEGS NNHKLSNQSN MKFANLHNSD GNSTLLNFDH  1620
KNYLGIENVQ MRNYSYWDGN RLQATFPSVP DSAILLAKYP AAFSNFSAPS STMEQQSLQS  1680
VVNSNELDVN GVSAYPTREI SNSKGMVDYQ VYRSREAAKV QPFTVDVNQR QDMFSEVQRR  1740
NGIETISSFQ HQGRGMVGIN VLGRGGIVVG GGCTTGVTDP VVALKRHFAK TEQQYGGQSS  1800
SIIREDESWR GNGDMSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-15	768	854	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-15	768	854	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023461.1	0.0	uncharacterized protein LOC21396603 isoform X2
TrEMBL	A0A2P5CPT9	0.0	A0A2P5CPT9_TREOI; Octamer-binding transcription factor
STRING	XP_010099638.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-167	MYB family protein