PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11573.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 389aa    MW: 43993.6 Da    PI: 7.242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11573.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11188234455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+ Y+k+Lq
  PK11573.1 188 DHIMAERKRREKLTQRFIALSAIVPGL-----KKMDKASVLGDAIVYVKQLQ 234
                699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16188250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-16188245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-11189237No hitNo description
SMARTSM003532.5E-13190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
XQGVEDYNNI FSLDNQLEFG SDDHQILVGG DNYKQDFSSE SNSSYSTITT SGGSDSIKKY  60
SHHDHHQASN KKPAPSSNSS QLLSFDNYQN QHYPNSSSPP KINMSDISST TLRPKKGLSQ  120
TDINFSSLDD VDHVVSNNKD RNSFIISNKK KNYSSSYQPS IFIKGTNDYN NNNKRPYSMI  180
KTPSHAQDHI MAERKRREKL TQRFIALSAI VPGLKKMDKA SVLGDAIVYV KQLQERVNIL  240
EEQSKSRTVE SVVFKKSQVS ISSSTDEQNQ DSSSSDQNFE GRSNNDQDYN HNNNNDNNQT  300
LTLLPEIEAR VYEKDVLIRI HCENHKGIVV KILSEIEKLD HHLSVVNTSV MPFGNCTLDI  360
TILAQMEKEF SMTVKDLVKN LRKALLKIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12188237857Transcription factor MYC2
5gnj_B1e-12188237857Transcription factor MYC2
5gnj_E1e-12188237857Transcription factor MYC2
5gnj_F1e-12188237857Transcription factor MYC2
5gnj_G1e-12188237857Transcription factor MYC2
5gnj_I1e-12188237857Transcription factor MYC2
5gnj_M1e-12188237857Transcription factor MYC2
5gnj_N1e-12188237857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERKRRE
2193198RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179628.18e-96transcription factor bHLH18-like
RefseqXP_024179629.18e-96transcription factor bHLH18-like
RefseqXP_024179631.18e-96transcription factor bHLH18-like
RefseqXP_024179632.18e-96transcription factor bHLH18-like
SwissprotQ9T0721e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5FH971e-121A0A2P5FH97_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_004288301.15e-92(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-54bHLH family protein