PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11424.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 767aa MW: 86057.5 Da PI: 4.8974

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11424.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	401	424	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F +k+ + +H+ + H PK11424.1 401 FECHKCSMTFDQKDAYLQHLLSfH 424 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.353	270	342	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	3.2E-5	271	326	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.9E-7	276	325	IPR016177	DNA-binding domain
PROSITE profile	PS50157	8.787	401	429	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	401	424	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	403	424	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.808	448	470	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	448	470	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	450	470	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
XAVATNRPQT QPEPTWKLDC LSQIDISSLS QSELHALSLC SSSAFDLHCT DDIVVPKIDP 60 ATFNESAGSR RQTYSRARRL LSSPSSSPSV RTVASAATGH RRRVAGLVPT PKVSHILADD 120 PERRENRLII DHLKRFISQD PQFNYVEFSQ PSSQMGMEID SDGGRGISMF DNGLALTNFG 180 GERKRKRGRK PKLLKVQLEM QNVEPHSYRS LEMVNRNGVA VDFSALGNAD DPYGEEFRRR 240 TVGLESEEAL LGFLRELDGQ WGSRRKKRKI VDASEFGDAL PIGWKLLLGL KRKEGRAWIY 300 CRRYISPNGQ QFVSCKEVSS YLQSVGGLNT PHLLNDHKNE NIQEDRPITE NNAGLIFKEG 360 EQRQDLNLSS ALPTPTSNEQ EKEISLLGIE NLAEVQIHAL FECHKCSMTF DQKDAYLQHL 420 LSFHQRTTRR YRLGSSVGDG VIIKDGKYEC QFCHKVFLER RRYNGHVGIH VRNFVRKVED 480 VPGSSAQEKI EEPSTEDLPA RISKMDALVE IAQNSILETS VGHDDGSKGD FAPDNSLAIL 540 SSDFHVLNPD HEMNTVYPHS EPDLDDCMID QDHLDRQEDE HVFSEGIGKT DGACEILDNK 600 MDSVPDNSTL LATRKLENNA PEHFVQEDNS LFNFDRVERP AIELGEVKEC DSICNVENEA 660 KMDYGSTSEN LKPVEVNASK NNTLETDTDI NINGPTNDTA IENIQQCSEG KELHLEVSES 720 STSMPQPLPC FSSLNETSDK RQASVTGFEE LRLEEIEPLQ YSFTGDQ

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

XAVATNRPQT QPEPTWKLDC LSQIDISSLS QSELHALSLC SSSAFDLHCT DDIVVPKIDP  60
ATFNESAGSR RQTYSRARRL LSSPSSSPSV RTVASAATGH RRRVAGLVPT PKVSHILADD  120
PERRENRLII DHLKRFISQD PQFNYVEFSQ PSSQMGMEID SDGGRGISMF DNGLALTNFG  180
GERKRKRGRK PKLLKVQLEM QNVEPHSYRS LEMVNRNGVA VDFSALGNAD DPYGEEFRRR  240
TVGLESEEAL LGFLRELDGQ WGSRRKKRKI VDASEFGDAL PIGWKLLLGL KRKEGRAWIY  300
CRRYISPNGQ QFVSCKEVSS YLQSVGGLNT PHLLNDHKNE NIQEDRPITE NNAGLIFKEG  360
EQRQDLNLSS ALPTPTSNEQ EKEISLLGIE NLAEVQIHAL FECHKCSMTF DQKDAYLQHL  420
LSFHQRTTRR YRLGSSVGDG VIIKDGKYEC QFCHKVFLER RRYNGHVGIH VRNFVRKVED  480
VPGSSAQEKI EEPSTEDLPA RISKMDALVE IAQNSILETS VGHDDGSKGD FAPDNSLAIL  540
SSDFHVLNPD HEMNTVYPHS EPDLDDCMID QDHLDRQEDE HVFSEGIGKT DGACEILDNK  600
MDSVPDNSTL LATRKLENNA PEHFVQEDNS LFNFDRVERP AIELGEVKEC DSICNVENEA  660
KMDYGSTSEN LKPVEVNASK NNTLETDTDI NINGPTNDTA IENIQQCSEG KELHLEVSES  720
STSMPQPLPC FSSLNETSDK RQASVTGFEE LRLEEIEPLQ YSFTGDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	190	ERKRKRGRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019874.1	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC112091165
TrEMBL	A0A2P5C4J3	0.0	A0A2P5C4J3_PARAD; TFIIH C1-like domain containing protein
STRING	XP_008237173.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19