PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 26839.4 Da PI: 9.4438 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.0003 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ++F ++ L H++ H PK11390.1 79 FKCQFCRRVFANSQALGGHQNAH 101 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 76 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.1E-6 | 76 | 106 | No hit | No description |
PROSITE profile | PS50157 | 11.552 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
XTQRPSYGGS TRIILIIIMS DHYYHHNNSS STSSSSSSTL KLFGFPITEN GEVLSCTSDN 60 KKEDYHTSSP SMWDDNRKFK CQFCRRVFAN SQALGGHQNA HKRERQRVSA QYQGRGPLLG 120 NAGPISPVLS PHSIRSLSSS ALYPPGRFTG FNNDNTSTAT IPTCCTTISR FDHHRSQPSQ 180 HAVAPPSYSH HHRLPDNTQY CLMSLRPREQ SFSTSSNTAS ATTSTPNPEV GHVDLHLKLS 240 LSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5CKU7 | 1e-58 | A0A2P5CKU7_PARAD; Yin/yang transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 2e-13 | C2H2 family protein |