PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11025.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 309aa    MW: 34321.8 Da    PI: 8.815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11025.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.5e-3262164199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++   ++++l++ +
  PK11025.1  62 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLADKERLFIDW 161
                89***************************966778999*************************************************776688889**** PP

                E-S CS
         B3  97 frk 99 
                +r+
  PK11025.1 162 RRR 164
                998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4257167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-3059166IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-2760149No hitNo description
PfamPF023621.3E-2962164IPR003340B3 DNA binding domain
SMARTSM010192.4E-2362165IPR003340B3 DNA binding domain
PROSITE profilePS5086314.76262165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
XEGSIDDHNH LTMMMNGPDT KLELMNSSPA STTTTGNGNG HDDVVSMSSS RSEVVVEREH  60
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS  120
SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG LADKERLFID WRRRPEAVVL PDHHHHHSSS  180
TINIPFSSFR SSNNSNNFSW SPSLMRPPPP MNYGGNIFNL HPYRTTNSYG GGGGCYNGYG  240
NVSNSAVYSG SGGSPVFYLR PPHNNMVSAT TLSSNVVAED QYSIGMVQNH HPSVVYGSVP  300
VAHGNNKAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-65551671116B3 domain-containing transcription factor NGA1
5os9_B2e-65551671116B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104899.11e-82B3 domain-containing transcription factor NGA1
TrEMBLA0A2P5CJ921e-101A0A2P5CJ92_TREOI; B3 DNA binding domain containing protein
STRINGXP_010104899.15e-82(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-61B3 family protein