PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 28651.8 Da PI: 6.7579 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 5e-17 | 222 | 258 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp++Rrgp g +tLCnaCGl+++ kg+ PK11000.1 222 CTNCGTSSksTPMMRRGPAGARTLCNACGLKWANKGV 258 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.911 | 82 | 117 | IPR010399 | Tify domain |
SMART | SM00979 | 1.6E-12 | 82 | 117 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.3E-12 | 85 | 116 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.0E-16 | 149 | 191 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.205 | 149 | 191 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.831 | 216 | 266 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-9 | 216 | 265 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-11 | 219 | 264 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-16 | 220 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.39E-15 | 221 | 265 | No hit | No description |
Pfam | PF00320 | 1.1E-14 | 222 | 258 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 222 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSESNQEASM YGRGAMANNN MHSGGGGHGD EEDDEVTGAE ESIDNPQLRY EDGGCVGAMN 60 GVQDVPSNVL YVPNSEYPPV AENGGSDQLT LSFQGEVYVF DAVSPDKVQA VLLLLGGYEI 120 PSGIPAMGTA PLNQRAVNQF VSKPVQPHRA ASLNRFREKR KERCFDKKIR YTVRKEVAMR 180 MQRKKGQFTS SKASSDEAGS AVIVWNGAQG SGQDESMQET SCTNCGTSSK STPMMRRGPA 240 GARTLCNACG LKWANKGVLR DLKVPX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112233.1 | 1e-150 | GATA transcription factor 28 | ||||
Swissprot | Q8GXL7 | 7e-72 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2P5FKR3 | 1e-164 | A0A2P5FKR3_TREOI; GATA transcription factor | ||||
STRING | XP_010112233.1 | 1e-149 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 8e-76 | ZIM-like 1 |
Publications ? help Back to Top | |||
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