PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10965.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family E2F/DP
Protein Properties Length: 450aa    MW: 50768.3 Da    PI: 5.4319
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10965.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.39.8e-27156221171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r ++sL+llt+kf++l++++e+++++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  PK10965.1 156 RFDSSLGLLTRKFVNLIHEAEDRTLDLNHTADIL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 221
                6789******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-27153222IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-17156219IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.6E-35156221IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-24158221IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.90E-36232339No hitNo description
SuperFamilySSF1440743.4E-26236338No hitNo description
PfamPF164211.8E-24238336IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSNSAQDPTS SHGLHHHLQF QLPHPHSHYS SAFSSPTNPQ FFHSFPHTQR PPRDHRPLHP  60
SSQSFDRLGV SDISNESHPG ADSAFTKLEL TQSNVKVETG MSGEIAVSGL SKVVNGQKHS  120
GQRKHNSKSK VPRQSIGSQT LKAESLNGFI PPNSCRFDSS LGLLTRKFVN LIHEAEDRTL  180
DLNHTADILE VQKRRIYDIT NVLEGIGLIE KTSKNHIRWK GNDLMGKREL DDWIAAVKAE  240
VESLYAEECR LDEEIRSKQN RLWALERDEN CQKYLFFTEE DILTLPCFEN QTLIAINAPK  300
ASYIEVPDPD EDLSFPQRQY KMIVRSTMGP IDVYLLSKYQ NENEDTTTNR ATSEGLSAWD  360
VGCCGREDEV IYSDHPGDQK SCVDNLSSLG PKSSGIQKII PSDVDVNDDY WFRSDPDVTI  420
TSLWANEEWT TQADGLFQEN TVETSTKLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-22151221273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104441.21e-146transcription factor E2FC isoform X1
TrEMBLA0A2P5DBS01e-160A0A2P5DBS0_PARAD; tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM
STRINGXP_010104441.11e-141(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-101E2F/DP family protein