PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10955.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 413aa MW: 44187 Da PI: 9.4258

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10955.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	117	175	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ PK10955.1 117 PESLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTT 175 57899***************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-32	119	174	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-24	119	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
XDCCRSRLKD ISKSPQKMIQ ELLGGGGGGG SGHHNLHHHH QHNHHHHLLG TPTHGDNQNR 60 KISSIINGGG LLEATTTTTT TTLLHNNSST VPITTPTTTT TPPTTTTSSG AGATATPESL 120 RCPRCDSANT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKTTIVSSS 180 VVSGKSAASG GGGVANSTGK MKMVMSSSEI NNIGRSGFGG GGLFDLHDHH QLSSNSPILW 240 GSPQNSHLLA LLRSTTTSPQ NPNPNPSSPQ NNNNINNNSS ESVVVKQQGG LDPVSQAPSL 300 GLCSSFWRNN QVNNNQSQNP HYQQINGLIS SASLPHHNNN DNNNNGIQEM YQRLRSSSST 360 TTSSSPANNN NNYYNDHHSS VGGPGDHQMG FWNINPPPFS WPDLSTTTNG AYP

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

XDCCRSRLKD ISKSPQKMIQ ELLGGGGGGG SGHHNLHHHH QHNHHHHLLG TPTHGDNQNR  60
KISSIINGGG LLEATTTTTT TTLLHNNSST VPITTPTTTT TPPTTTTSSG AGATATPESL  120
RCPRCDSANT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKTTIVSSS  180
VVSGKSAASG GGGVANSTGK MKMVMSSSEI NNIGRSGFGG GGLFDLHDHH QLSSNSPILW  240
GSPQNSHLLA LLRSTTTSPQ NPNPNPSSPQ NNNNINNNSS ESVVVKQQGG LDPVSQAPSL  300
GLCSSFWRNN QVNNNQSQNP HYQQINGLIS SASLPHHNNN DNNNNGIQEM YQRLRSSSST  360
TTSSSPANNN NNYYNDHHSS VGGPGDHQMG FWNINPPPFS WPDLSTTTNG AYP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924337.1	1e-80	dof zinc finger protein DOF1.1-like
Refseq	XP_024932646.1	1e-80	dof zinc finger protein DOF1.1-like
TrEMBL	A0A2P5ADJ9	3e-94	A0A2P5ADJ9_PARAD; Zinc finger, Dof-type
STRING	POPTR_0007s11620.1	3e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	6e-31	Dof family protein