PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10933.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 104aa    MW: 12166.5 Da    PI: 9.7967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10933.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-191399899
               -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               + +l+ ++l +p +fa++h ++k++++tl       r W+v+l    +++ + +++GWkeF ++n Lk gD+++F+++++++ el+v+++rk
  PK10933.1 13 PLHLEGHNLNIPVHFARQHLKDKTQTMTLW---VGERCWDVRL--LAHRKYFSFSAGWKEFTRDNSLKPGDVCIFEVINKNQSELKVTIIRK 99
               44567788***********87877754444...467*******..999999**************************9999999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-222100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-242101IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-136100IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6066100IPR003340B3 DNA binding domain
PfamPF023623.4E-17999IPR003340B3 DNA binding domain
CDDcd100171.24E-171898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
XSENPSLKVD LRPLHLEGHN LNIPVHFARQ HLKDKTQTMT LWVGERCWDV RLLAHRKYFS  60
FSAGWKEFTR DNSLKPGDVC IFEVINKNQS ELKVTIIRKT GENX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1649846141B3 domain-containing transcription factor VRN1
4i1k_B8e-1649846141B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FXZ24e-31A0A2P5FXZ2_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-17related to vernalization1 1