PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10922.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 295aa MW: 34197.7 Da PI: 7.1323

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10922.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	2.9e-24	123	213	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+ Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + ++tr gC +l+v +++ +kw vtk+ ++HnH+l+ PK10922.2 123 EFFIVYGRHTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYASRKDR-VlpPPPVTREGCPVMLRVALRDGEKWAVTKFIKKHNHTLM 213 699**************************************99883333.245899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	123	213	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
XFFFGLCCNP TPNCSSSSLG SLLRSELPVQ WCSCFCTIFS VALVFITKSV RVRLVMEIAS 60 SQSFDSDEGE QCLPIESHGE TEHMADDEIA EHVDQFEESL PMTGNVIEPY IGMEFKSRDD 120 AREFFIVYGR HTGFTVRIHH NRRSRINNMV IGQDFVCSKE GFREKKYASR KDRVLPPPPV 180 TREGCPVMLR VALRDGEKWA VTKFIKKHNH TLMSPSKVPW RGSSKHMITE DEKDRRIGEL 240 TLELSKERQR CKRRCAVYRE QLHMILKDIE HHTDHLSKRV QDIVQNIQEF ENEDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	RQRCKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020858.1	1e-136	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024020859.1	1e-136	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2P5DPC2	1e-139	A0A2P5DPC2_PARAD; FHY3/FAR1 family
STRING	XP_002527269.1	1e-123	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-34	FAR1 family protein