PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10917.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family LFY
Protein Properties Length: 100aa    MW: 11437.2 Da    PI: 4.1024
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10917.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY1327.4e-419100204279
    FLO_LFY 204 eededeeeeededeeg................sgedge....erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPt 279
                eed+de +e+d+d+++                +         erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL qvq+iakerG+kcPt
  PK10917.1   9 EEDDDEYDEDDDDNTNvvfgkgsgrsnscssdQ----IritcERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLFQVQSIAKERGDKCPT 100
                233333333333333367777766665544333....04556*****************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.0E-3719100IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
DINDAADQEE DDDEYDEDDD DNTNVVFGKG SGRSNSCSSD QIRITCERQR EHPFIVTEPG  60
EVARGKKNGL DYLFHLYEQC RDFLFQVQSI AKERGDKCPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A3e-3147100457PROTEIN LEAFY
2vy2_A3e-3147100457PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor required for the specification of floral meristem identity.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8618242e-38KT861824.1 Amelanchier hybrid cultivar isolate 977 clone L6 LEAFY1 (LFY1) gene, exon 2, intron 2, and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563048.19e-32PREDICTED: floricaula/leafy homolog 1 isoform X2
RefseqXP_016563049.19e-32PREDICTED: floricaula/leafy homolog 1 isoform X2
RefseqXP_023923147.14e-32floricaula/leafy homolog
SwissprotO040641e-31FLLH_POPTR; Floricaula/leafy homolog
SwissprotO226211e-31ALF_PETHY; Protein ALF
TrEMBLD2DF357e-33D2DF35_BRARP; LEAFY (Fragment)
STRINGLus100224272e-30(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.19e-33floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]
  2. Souer E, et al.
    Genetic control of branching pattern and floral identity during Petunia inflorescence development.
    Development, 1998. 125(4): p. 733-42
    [PMID:9435293]