PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 626aa MW: 69903.7 Da PI: 8.6689 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.1e-18 | 22 | 107 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s++l+ +l +p kf+++ +g + + + le +sg++W v+l ++ g +l GW Fv++n ++ gDf++F++d++ f +v++f++ PK10894.1 22 SSHLSAEQLKIPTKFMKHLEGRSSG--SVALEGPSGKTWLVNL--IQNNGDLFLHHGWPTFVRDNYVECGDFLIFRYDRELHF--TVQIFDQ 107 56777788********777888544..6***************..7777889************************9886666..9**9997 PP | |||||||
2 | B3 | 49.1 | 1e-15 | 268 | 360 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+ ++++ +v+ s l +p +f +h ++++++++l++++g+ W+v+ ++ +++l +GW Fv+ n +k gD+++F+l+g+ ef +v++ PK10894.1 268 FVRIMKSFNVSGSFTLNIPYQFSMAHL--PNCKVKIVLQNLNGQCWTVNSVPsTRVHTSHTLCGGWMAFVRYNAIKIGDVCIFELMGECEF--RVHI 360 566777778999999*******98996..4699****************9445555667999*************************9999..5555 PP | |||||||
3 | B3 | 45.7 | 1.2e-14 | 502 | 594 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++ + + s l +p +f +h + ++++ l++++g+ W+v+ s++ +++ +GW Fv+ n++k gD+++F+l+g+ e +v+ PK10894.1 502 FVKIMKKFNISGSYTLKIPYQFSIAHlpN----YKTEILLRNLNGECWTVNS--VPDSQGrlvHTFCGGWMAFVRGNDVKIGDVCIFELVGKCEM--RVH 593 778887878888889*******9999433....4468***************..5555555689999**********************996554..555 PP E CS B3 96 v 96 + PK10894.1 594 I 594 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-23 | 13 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-23 | 14 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.706 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-12 | 17 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.85E-19 | 22 | 106 | No hit | No description |
Pfam | PF02362 | 1.1E-16 | 22 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-23 | 260 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-24 | 261 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-20 | 266 | 361 | No hit | No description |
SMART | SM01019 | 4.7E-14 | 268 | 364 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 268 | 364 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-13 | 268 | 360 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-22 | 494 | 595 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-23 | 495 | 596 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.94E-21 | 500 | 594 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 502 | 598 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-14 | 502 | 598 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-12 | 502 | 594 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
METESMIVLP SGKRPHFYAF YSSHLSAEQL KIPTKFMKHL EGRSSGSVAL EGPSGKTWLV 60 NLIQNNGDLF LHHGWPTFVR DNYVECGDFL IFRYDRELHF TVQIFDQSAC EKEVAFHSKC 120 SQNFHDQDLG KKRVREDGIS SSDRIVEGVL KKMREGSPEL YPDRIHRTQE AVLDLCRQNG 180 CHCDGVTRPC EHIDYSKETQ QLSKSYAITS QSENCDERPD LDIVLFKAKA LQSLCSNGDR 240 FNVNGGGCVQ MSSAHEVVQS FTSCYPYFVR IMKSFNVSGS FTLNIPYQFS MAHLPNCKVK 300 IVLQNLNGQC WTVNSVPSTR VHTSHTLCGG WMAFVRYNAI KIGDVCIFEL MGECEFRVHI 360 LGVGDEDVDC QSGKVTSSRP NTGHAVTSHK SIKGVSKKLR GNSSKAYSKT LKLVDISDKK 420 VSKKLTEAPY ANDTKKRSSA SKALTKVALC SQSKATNKKL VVHRSRGVED ELGSQPRSGP 480 RLLLALDEER AARSFSSCFP NFVKIMKKFN ISGSYTLKIP YQFSIAHLPN YKTEILLRNL 540 NGECWTVNSV PDSQGRLVHT FCGGWMAFVR GNDVKIGDVC IFELVGKCEM RVHISGVGKR 600 GLDHQVGEST SNNLALISST SDHLSL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089923.1 | 0.0 | B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A2P5FN21 | 0.0 | A0A2P5FN21_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010089923.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 6e-16 | B3 family protein |