PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 626aa    MW: 69903.7 Da    PI: 8.6689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10894.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-1822107899
                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                s++l+  +l +p kf+++ +g + +   + le +sg++W v+l   ++ g  +l  GW  Fv++n ++ gDf++F++d++  f  +v++f++
  PK10894.1  22 SSHLSAEQLKIPTKFMKHLEGRSSG--SVALEGPSGKTWLVNL--IQNNGDLFLHHGWPTFVRDNYVECGDFLIFRYDRELHF--TVQIFDQ 107
                56777788********777888544..6***************..7777889************************9886666..9**9997 PP

2B349.11e-15268360196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+ ++++ +v+ s  l +p +f  +h   ++++++++l++++g+ W+v+    ++   +++l +GW  Fv+ n +k gD+++F+l+g+ ef  +v++
  PK10894.1 268 FVRIMKSFNVSGSFTLNIPYQFSMAHL--PNCKVKIVLQNLNGQCWTVNSVPsTRVHTSHTLCGGWMAFVRYNAIKIGDVCIFELMGECEF--RVHI 360
                566777778999999*******98996..4699****************9445555667999*************************9999..5555 PP

3B345.71.2e-14502594196
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k++++ + + s  l +p +f  +h  +     ++++ l++++g+ W+v+      s++   +++ +GW  Fv+ n++k gD+++F+l+g+ e   +v+
  PK10894.1 502 FVKIMKKFNISGSYTLKIPYQFSIAHlpN----YKTEILLRNLNGECWTVNS--VPDSQGrlvHTFCGGWMAFVRGNDVKIGDVCIFELVGKCEM--RVH 593
                778887878888889*******9999433....4468***************..5555555689999**********************996554..555 PP

                E CS
         B3  96 v 96 
                +
  PK10894.1 594 I 594
                4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-2313110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2314110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.70615108IPR003340B3 DNA binding domain
SMARTSM010194.2E-1217108IPR003340B3 DNA binding domain
CDDcd100172.85E-1922106No hitNo description
PfamPF023621.1E-1622107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-23260362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24261362IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-20266361No hitNo description
SMARTSM010194.7E-14268364IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014268364IPR003340B3 DNA binding domain
PfamPF023628.5E-13268360IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-22494595IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-23495596IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-21500594No hitNo description
PROSITE profilePS5086312.619502598IPR003340B3 DNA binding domain
SMARTSM010196.2E-14502598IPR003340B3 DNA binding domain
PfamPF023623.2E-12502594IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
METESMIVLP SGKRPHFYAF YSSHLSAEQL KIPTKFMKHL EGRSSGSVAL EGPSGKTWLV  60
NLIQNNGDLF LHHGWPTFVR DNYVECGDFL IFRYDRELHF TVQIFDQSAC EKEVAFHSKC  120
SQNFHDQDLG KKRVREDGIS SSDRIVEGVL KKMREGSPEL YPDRIHRTQE AVLDLCRQNG  180
CHCDGVTRPC EHIDYSKETQ QLSKSYAITS QSENCDERPD LDIVLFKAKA LQSLCSNGDR  240
FNVNGGGCVQ MSSAHEVVQS FTSCYPYFVR IMKSFNVSGS FTLNIPYQFS MAHLPNCKVK  300
IVLQNLNGQC WTVNSVPSTR VHTSHTLCGG WMAFVRYNAI KIGDVCIFEL MGECEFRVHI  360
LGVGDEDVDC QSGKVTSSRP NTGHAVTSHK SIKGVSKKLR GNSSKAYSKT LKLVDISDKK  420
VSKKLTEAPY ANDTKKRSSA SKALTKVALC SQSKATNKKL VVHRSRGVED ELGSQPRSGP  480
RLLLALDEER AARSFSSCFP NFVKIMKKFN ISGSYTLKIP YQFSIAHLPN YKTEILLRNL  540
NGECWTVNSV PDSQGRLVHT FCGGWMAFVR GNDVKIGDVC IFELVGKCEM RVHISGVGKR  600
GLDHQVGEST SNNLALISST SDHLSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089923.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A2P5FN210.0A0A2P5FN21_TREOI; B3 DNA binding domain containing protein
STRINGXP_010089923.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.16e-16B3 family protein