PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10877.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family E2F/DP
Protein Properties Length: 313aa    MW: 35134.4 Da    PI: 9.1019
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10877.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.41.8e-2170172471
    E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse......................................dvknkrRRiYDilNVLealnliekkek 64 
                 +Lr++++    +++k e+ g+ t+ eva+e+++e                                      d+kn+rRR+YD+lNVL+al++i++ +k
  PK10877.1  70 GGLRQFSTI---VCKKLEAkGRATYGEVADEIIAEfggavkespvsldeviffskfveiyfscakfxnlnyqfDEKNIRRRVYDALNVLMALDIITR-DK 165
                69*******...****9999*****************************************************************************.** PP

    E2F_TDP  65 neirwkg 71 
                +ei+wkg
  PK10877.1 166 KEIQWKG 172
                *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.0E-8510308IPR015648Transcription factor DP
SMARTSM013721.9E-2067172IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.7E-3369177IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-1470102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.3E-1971172IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-14139173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011382.3E-40179313IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-36180295No hitNo description
CDDcd144583.06E-33181280IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-31181282IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
XPPLSWVLRP THFVGSLISV ETHSRSSPNK GSETIMDQSH QVSANLPTDH TPIKKHNAEK  60
KKRPCKIIGG GLRQFSTIVC KKLEAKGRAT YGEVADEIIA EFGGAVKESP VSLDEVIFFS  120
KFVEIYFSCA KFXNLNYQFD EKNIRRRVYD ALNVLMALDI ITRDKKEIQW KGLPSQDVKA  180
LEELKATRMK LVNRIGKKTA YLNDLKDQVE GFQHLISRNK QLLNRESSPL EAFSLPFLLV  240
QTSSHATVEI EISEDMQLVH FDFNSTPFSL HDDAYILKLL RRHQLPAESR DISSSSSAVS  300
SSSSALACGG TKX
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031258.11e-113transcription factor-like protein DPA isoform X1
SwissprotQ9FNY27e-76DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2P5DS851e-113A0A2P5DS85_TREOI; DP transcription factor
STRINGVIT_08s0007g00170.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-77Transcription factor DP