PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10827.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 447aa MW: 49819.3 Da PI: 6.1407

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10827.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.4e-38	75	136	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k+l+cprC+s tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+sss PK10827.2 75 PDKILPCPRCNSLGTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGRRRNKHSSS 136 68999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	63	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSSXNFQDEC REEATKAEVE DTGERCCEHD SFSDSEGKGN SYQNHVQENE VNCNPVEYQR 60 SESDRSSKEK ILKRPDKILP CPRCNSLGTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTIR 120 NVPVGAGRRR NKHSSSQLHQ ETTNDSAAVV TQEDINNATS DQSPPSNRFP ASARLDNGMA 180 EGLKFSSETP LCESMETKLN IEDHKKSEIE SAAFGDSSED LSLSSNSLNA HSSQNSSCFR 240 REDDSADHRH PMQCYPVPQW AYPWNPGWSV MMVGQNDSNP NPSNVGTLPM VSIPGFSAPN 300 TPFPFLPASY WGYMPNWDTQ NWTQPINRYS GNMPPSSSTV NTNSSSNSSA ILGKHSRDTN 360 MQAEEKTGQR LWVPKTLRID DPDKAAKSSI WSTLGIKPDK NTPIIRGGIF KAFQPKSDAN 420 SRSLDADQVL QSNPAALSRS HSFEEST

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSSXNFQDEC REEATKAEVE DTGERCCEHD SFSDSEGKGN SYQNHVQENE VNCNPVEYQR  60
SESDRSSKEK ILKRPDKILP CPRCNSLGTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTIR  120
NVPVGAGRRR NKHSSSQLHQ ETTNDSAAVV TQEDINNATS DQSPPSNRFP ASARLDNGMA  180
EGLKFSSETP LCESMETKLN IEDHKKSEIE SAAFGDSSED LSLSSNSLNA HSSQNSSCFR  240
REDDSADHRH PMQCYPVPQW AYPWNPGWSV MMVGQNDSNP NPSNVGTLPM VSIPGFSAPN  300
TPFPFLPASY WGYMPNWDTQ NWTQPINRYS GNMPPSSSTV NTNSSSNSSA ILGKHSRDTN  360
MQAEEKTGQR LWVPKTLRID DPDKAAKSSI WSTLGIKPDK NTPIIRGGIF KAFQPKSDAN  420
SRSLDADQVL QSNPAALSRS HSFEEST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024457.1	1e-174	cyclic dof factor 2
TrEMBL	A0A2P5CDN6	0.0	A0A2P5CDN6_TREOI; Zinc finger, Dof-type
STRING	XP_010086689.1	1e-169	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-63	cycling DOF factor 2