PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 415aa MW: 47588.2 Da PI: 9.5688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.5e-15 | 10 | 96 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + + ++l++p +f++++ + s+ t++ ++g W+v l +k ++r+++ +GW++Fv+ g++ g ++F+++g+++f +v +f+ PK10791.1 10 IVLSIIQAKQLRIPDNFVKKFRDE--LSTVATITVPDGHIWRVGL--KKADNRIWFHDGWQDFVERYGIRLGYLLIFRYEGNTTF--NVYIFN 96 5555666789********999755..888999999**********..********************************998888..888875 PP | |||||||
2 | B3 | 56.5 | 5.1e-18 | 301 | 391 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+ egD++vF++ + +e l+v+vfr PK10791.1 301 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTSDGRQWPVRCLYRGGR--AKLSQGWYEFSLENNFGEGDVCVFEMLKMKEVVLKVTVFR 391 78899******************877743...5***************665555..66***********************888788889999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-21 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.78E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.761 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-12 | 12 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-23 | 290 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-23 | 291 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-21 | 296 | 391 | No hit | No description |
PROSITE profile | PS50863 | 13.38 | 298 | 393 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-16 | 298 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-16 | 301 | 391 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MHRPYFHKLI VLSIIQAKQL RIPDNFVKKF RDELSTVATI TVPDGHIWRV GLKKADNRIW 60 FHDGWQDFVE RYGIRLGYLL IFRYEGNTTF NVYIFNLTAS EVNYQGNSVH SSQAIYNNRC 120 QIFEEMEDDS DEILGFSSGR MATGPLKAKL LGERAEQMAQ GKVFNPPSLQ NLFNGSKLNC 180 INWGIEGNMD PAKGTGNFQA QNQLTQGVPQ FNVMESKKSG EEVKMNNSEE ELRKSKKAGR 240 KKRKIDSNGQ EPPIKHDETD MRFRFYESAS ARKRTVTAEE RERAISSAKT FEPTNPFCRV 300 VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQTSDGRQ WPVRCLYRGG RAKLSQGWYE 360 FSLENNFGEG DVCVFEMLKM KEVVLKVTVF RVLEDAGVIN HPSQHNVNNS KLVRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-70 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-70 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021268.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-138 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2P5BW72 | 0.0 | A0A2P5BW72_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-139 | B3 family protein |
Publications ? help Back to Top | |||
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