PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10723.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GeBP
Protein Properties Length: 326aa    MW: 35871.2 Da    PI: 5.5932
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10723.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573106.91.5e-33109202197
     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                klfqrlwse+Deiv+L+G+ d++ak+g+ ps+ d++af +f+kks++++++k ql++K+rrLKkK++++ ++    k+ + +k h++++felskkiWg
  PK10723.2 109 KLFQRLWSEDDEIVILKGISDYAAKKGSIPSAaDMHAFQDFIKKSLQIDFTKAQLSDKLRRLKKKYENNASR----KKYNPTKLHEKEVFELSKKIWG 202
                579*************************88877***************************************....778889***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.4E-31111202IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPKRPSHLD DPPVASSSEA EEDSSSEEEE EEEEEEGASE EDEEQESQKS KTTPLTKAVP  60
ISTVRSSVKR PSNSEVKDSK RAKKKGSEPD GGSAIAEDES KKTGDESKKL FQRLWSEDDE  120
IVILKGISDY AAKKGSIPSA ADMHAFQDFI KKSLQIDFTK AQLSDKLRRL KKKYENNASR  180
KKYNPTKLHE KEVFELSKKI WGGGEKLVVK AEQPKANGTG TARSSKALAS PQNLSSPSLG  240
PAEDLLSSPK LGVMEELLSS PSLGNFGLSE HILSKGLELV PESKRAELDA KWKKIHMAEM  300
ELFAKRSQLL ADQTTLILEA LKPADH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168181RLKKKYENNASRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886154.11e-81probable transcription factor At1g61730
TrEMBLA0A2P5CUS72e-97A0A2P5CUS7_TREOI; Mediator-associated protein
STRINGXP_010108509.17e-76(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-26DNA-binding storekeeper protein-related transcriptional regulator