PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 180aa MW: 21092.4 Da PI: 10.8075 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS LCdae a+iifss+gkly y+s PK10594.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAELALIIFSSSGKLYQYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 74.4 | 3.1e-25 | 80 | 172 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ +++ e +++e++ +k+ +e+L+ ++R+l GedL++L +keL+qLe+qL+ +++++R kK +++ e+i+ l+++ ++l een++L+kk++ PK10594.1 80 HNQRSTTIEFWKTEIEEMKRSTETLEGNLRNLAGEDLSNLGMKELRQLERQLKIGVERVRCKKRRIVSEHINFLKRRRRALVEENTRLQKKVK 172 44678889**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.408 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.24E-38 | 2 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-22 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.215 | 87 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGRGKVEVKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AELALIIFSS SGKLYQYASH 60 DMDRSIVRYR SEMGLLGSTH NQRSTTIEFW KTEIEEMKRS TETLEGNLRN LAGEDLSNLG 120 MKELRQLERQ LKIGVERVRC KKRRIVSEHI NFLKRRRRAL VEENTRLQKK VKLLDQQQEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 6e-26 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 6e-26 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 6e-26 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 6e-26 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 157 | KRRIVSEHINFLKRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017888.1 | 1e-101 | agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A2P5FDA0 | 1e-110 | A0A2P5FDA0_TREOI; MADS-box transcription factor | ||||
STRING | VIT_17s0000g01230.t01 | 2e-87 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-46 | AGAMOUS-like 16 |