PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10592.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ZF-HD
Protein Properties Length: 338aa    MW: 36650.2 Da    PI: 8.6104
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10592.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.63e-3371129360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                   v Y+eClkNhAa+lGgha+DGCgE+mps+++  +++++lkCaACgCHRn+HRre++e+
    PK10592.1  71 VVSYRECLKNHAATLGGHALDGCGEYMPSPTAIsTDPTSLKCAACGCHRNYHRREPDEQ 129
                  689**************************9999899*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2772126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20674125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2274125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-3074125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.37E-18220288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30221289IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-25227284IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEITPTITTT TATNTGSTKS PEAESETPTR IQPIKPISIS NGVLKRHNPH HHHHHHHHLP  60
APAAVSSPTA VVSYRECLKN HAATLGGHAL DGCGEYMPSP TAISTDPTSL KCAACGCHRN  120
YHRREPDEQA LLLPHHHHPT TTTTHVIEYQ PHHRHHPPPP PQPHHGGGNR SPNSASPPPI  180
SSSYYPSAPH MLLALSTGLS GPGGAQENAG VVGGGGGMIT PNSNSSRKRF RTKFSQEQKE  240
KMYEFAERVG WKMQKRDEDI VMEFCNDVGV DKGVLKVWMH NNKNTLGKKD INGGGASTGG  300
RSNNNNNNTN LNLLEQNHNN GGSSNKTNSE NDNNNNNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-212262851675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879458.11e-106zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2P5D1Z11e-116A0A2P5D1Z1_TREOI; Octamer-binding transcription factor
STRINGXP_004304301.11e-103(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-66homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]