PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29963.3 Da PI: 10.1186 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.2 | 8.3e-20 | 172 | 256 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++s +l+lp++f+++h g+k++ ++ +r+W+vkl ++ ++++++kGW F +an +++gD ++F++++r++++l+v+++r+ PK10583.1 172 TGRSYNLRLPNSFIKSHLGSKTQ---IISLKVGSRKWDVKL--LNCECGFFFSKGWAAFLEANSVNTGDACIFEFVSREQASLKVSIIRN 256 345578***********767655...55556688*******..********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.996 | 1 | 65 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-7 | 3 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-6 | 3 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-19 | 155 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-17 | 158 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.80E-14 | 161 | 255 | No hit | No description |
SMART | SM01019 | 1.2E-10 | 162 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 163 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-17 | 164 | 256 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
SSVSLALPCG HTWKIGLVRR DNKIFLQKKW PKFVQHYGII KINRHLLIFD YRGNSKFDVS 60 ITDETSCEID YTHFPFHSDE KKIDKAPVIR LTSSEECSSN SDSDSVSNSV YEAKFMISAE 120 TKDDTLKKMK QGKRRRHEGP YNKYTDTKAY KEASQFYSKY PFFKRIIRMD KTGRSYNLRL 180 PNSFIKSHLG SKTQIISLKV GSRKWDVKLL NCECGFFFSK GWAAFLEANS VNTGDACIFE 240 FVSREQASLK VSIIRNNRV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-14 | B3 family protein |