PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10580.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25006.8 Da    PI: 5.955
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10580.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-152302351
               HHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 23 KAeELSvLCdaevaviifsstgklyeyss 51
               KA+ELSvLC+aevaviifs++gklye++s
  PK10580.1  2 KAYELSVLCEAEVAVIIFSNRGKLYEFCS 30
               9**************************96 PP
2K-box99.54.9e-335814513100
      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +e+++qe+ kLk+++e Lq++qR+llGedL++L+ keL+qLe+qLe sl++iRs+K++ ll+q+++lq++e+ l e+nk+Lr+klee
  PK10580.1  58 SHENSYQEYLKLKARVEVLQKSQRNLLGEDLGPLNTKELEQLENQLEISLRHIRSTKTQCLLDQLNDLQHREQFLLEANKTLRRKLEE 145
                5899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.11132IPR002100Transcription factor, MADS-box
SMARTSM004320.0014231IPR002100Transcription factor, MADS-box
PfamPF003198.6E-11228IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-15249IPR002100Transcription factor, MADS-box
PfamPF014864.9E-2857143IPR002487Transcription factor, K-box
PROSITE profilePS5129716.34759149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
XKAYELSVLC EAEVAVIIFS NRGKLYEFCS GSSMVKTVEK YKKYSYGGLD ATQPLIDSHE  60
NSYQEYLKLK ARVEVLQKSQ RNLLGEDLGP LNTKELEQLE NQLEISLRHI RSTKTQCLLD  120
QLNDLQHREQ FLLEANKTLR RKLEENSTQN PLRLAWEAAA EEHNNNAYTH LPSQTDQGFY  180
QPLGNNCTLQ TGYSNSVGPT EMNGGAPAQT LNGYMHGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-30461431101Developmental protein SEPALLATA 3
4ox0_B7e-30461431101Developmental protein SEPALLATA 3
4ox0_C7e-30461431101Developmental protein SEPALLATA 3
4ox0_D7e-30461431101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024829.11e-110MADS-box protein EJ2
SwissprotQ8LLR25e-87MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0B4U5D91e-101A0A0B4U5D9_FICCA; MADS-box protein
STRINGXP_010257958.11e-100(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]