PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10560.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 289aa    MW: 33380 Da    PI: 9.2179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10560.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000121937523
               TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  5 dCgksFsrksnLkrHirtH 23
               dC+ +++rk++L+rH+  H
  PK10560.2 19 DCPSRYRRKDHLNRHLLIH 37
               9***************998 PP
2zf-C2H216.42.6e-0585109123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cgk F  +s L++H ++H
  PK10560.2  85 HVCQeaGCGKAFAFPSRLRKHEQSH 109
                789999***************9998 PP
3zf-C2H214.69.8e-05177200323
                ET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                C    C  +Fs+ksnL++H++  H
  PK10560.2 177 CLykGCLCTFSTKSNLNQHLKAvH 200
                66679***************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355511637IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-41739IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.97E-72479No hitNo description
Gene3DG3DSA:3.30.160.601.1E-44068IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.114267IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1364272IPR007087Zinc finger, C2H2
PROSITE patternPS0002804467IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-879109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.69E-581111No hitNo description
SMARTSM003550.01385109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86685114IPR007087Zinc finger, C2H2
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
SMARTSM003554.7117142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SMARTSM0035515145166IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.07E-7156213No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4156197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.029175200IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365175205IPR007087Zinc finger, C2H2
PROSITE patternPS000280177200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-5199228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.8206232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
DLDHATFSLR GRMSXPVDDC PSRYRRKDHL NRHLLIHKGK LFKCPIENCK SEFSVKANIK  60
RHVEELHNEG RPSPGTECEN TERKHVCQEA GCGKAFAFPS RLRKHEQSHV KLESIEALCA  120
EPGCMKVFTN EQCLKDHIQL CHRHISCKVC GSKHLKKNMK RHLRTHERKS SFESIKCLYK  180
GCLCTFSTKS NLNQHLKAVH FNQKPYVCGF SGCGMRFAYK HVRDNHEKSS CHVYTHGDFE  240
EADEQFRSRP RGGRKRKYPS LVELLVRKRI TPPNDLDGLF ECSDNLSCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160LKKNMKR
2248256RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104482.11e-134transcription factor IIIA
SwissprotQ84MZ41e-111TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P5E9Z91e-145A0A2P5E9Z9_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010104482.11e-133(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-114transcription factor IIIA