PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10560.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 299aa    MW: 34613.5 Da    PI: 9.3178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10560.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-062347123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               ++Cp  dC+ +++rk++L+rH+  H
  PK10560.1 23 HVCPvdDCPSRYRRKDHLNRHLLIH 47
               79********************998 PP
2zf-C2H216.32.8e-0595119123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cgk F  +s L++H ++H
  PK10560.1  95 HVCQeaGCGKAFAFPSRLRKHEQSH 119
                789999***************9998 PP
3zf-C2H214.50.0001187210323
                ET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                C    C  +Fs+ksnL++H++  H
  PK10560.1 187 CLykGCLCTFSTKSNLNQHLKAvH 210
                66679***************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-102049IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-62049No hitNo description
PROSITE profilePS501578.9952352IPR007087Zinc finger, C2H2
SMARTSM003550.0042347IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802547IPR007087Zinc finger, C2H2
SuperFamilySSF576674.27E-55078No hitNo description
Gene3DG3DSA:3.30.160.601.1E-45078IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1365282IPR007087Zinc finger, C2H2
SMARTSM003550.115277IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805477IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-889119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-591121No hitNo description
PROSITE profilePS5015710.86695124IPR007087Zinc finger, C2H2
SMARTSM003550.01395119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
SMARTSM0035510127152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
SMARTSM0035515155176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4166207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.64E-7166222No hitNo description
PROSITE profilePS5015711.365185215IPR007087Zinc finger, C2H2
SMARTSM003550.029185210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-5209238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.8216242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
XGDLLRSSFK RTLISYIQFE RPHVCPVDDC PSRYRRKDHL NRHLLIHKGK LFKCPIENCK  60
SEFSVKANIK RHVEELHNEG RPSPSTECEN TERKHVCQEA GCGKAFAFPS RLRKHEQSHV  120
KLESIEALCA EPGCMKVFTN EQCLKGHIEL CHRHISCKVC GSKHLKKNMK RHLRTHERKS  180
SFESIKCLYK GCLCTFSTKS NLNQHLKAVH FNQKPYVCGF SGCGMRFAYK HVRDNHEKSS  240
CHVYTHGDFE EADEQFRSRP RGGRKRKYPS LVELLVRKRI TPPNDLDGLF ECSDNLSCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170LKKNMKR
2258266RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104482.11e-136transcription factor IIIA
SwissprotQ84MZ41e-113TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P5E9Z91e-148A0A2P5E9Z9_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010104482.11e-136(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-116transcription factor IIIA