PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10271.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 165aa MW: 19172.7 Da PI: 8.0127 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.3 | 2.2e-21 | 3 | 52 | 80 | 129 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk++++++++ +g++ktLvfy+grap+g+ktdW+mheyrle PK10271.2 3 AGFWKATGRDKAIHVSDTKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 52 79**********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.859 | 1 | 78 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-10 | 3 | 51 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-25 | 3 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
XAAGFWKATG RDKAIHVSDT KRIGMRKTLV FYTGRAPHGQ KTDWIMHEYR LEDNDTTTAA 60 PADQIQEDGW VVCRVFKKKN HNRSFQPELG NNNNNNQEEL SYHPQMKTSI NGNSTPLVLD 120 HHHHQHLHHQ HHQPKHFQQL YDNYTFDHHG SMQLPQLFSP ESGAX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-19 | 2 | 80 | 94 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-19 | 2 | 80 | 94 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-19 | 2 | 80 | 94 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-19 | 2 | 80 | 94 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-19 | 2 | 80 | 97 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-19 | 2 | 80 | 94 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-19 | 2 | 80 | 94 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 8e-33 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020418176.1 | 1e-62 | protein SOMBRERO isoform X2 | ||||
Swissprot | Q9MA17 | 3e-43 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A2P5B601 | 3e-77 | A0A2P5B601_TREOI; NAC domain containing protein | ||||
STRING | XP_009368592.1 | 1e-60 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7204 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 2e-43 | NAC family protein |
Publications ? help Back to Top | |||
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