PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10243.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 512aa    MW: 57504.3 Da    PI: 8.7724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10243.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1618106799
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  d+l  + l +pk+f+ ++g++  +sk ++++ + g  W++kl  +k++g+++l++GW +F++   ++ g ++ F+++g+s+f  +v ++++
  PK10243.1  18 LQDSLFDNKLKIPKEFMVKYGSNIDTSKPIVVKVPGGGAWKMKL--TKCDGHIWLGEGWPSFARHYSIERGYSLFFRYEGQSRF--HVVIIDA 106
                467788889***********999999999***************..*********************************99999..8888875 PP
2B340.74.3e-13250347296
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                + vl++ + + +  l lp +f +e+ g+k ++ ++tl+   +gr+W  kl++  r++s r ++  ++W+eF+ +n Lk  D+++F+l++++e  ++v++
  PK10243.1 250 KIVLKKMHLHDRYELALPAEFWRENVGEK-SDLDVTLYVpHNGRTWLGKLQIkaRNGSPRaVFSIRCWREFAVENCLKLSDVCTFELTNKNEMMFKVSI 347
                556667777788889**********5554.5668999995567****9998877444444255559********************9865555445555 PP
3B335.81.5e-114224821887
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                ++++f+   +gk ++ +t++      + W v+l  +++sg+ ++ +GW +Fvk+n+L+ gD+++F+l+ +
  PK10243.1 422 ISNNFL---QGK-PGAVTIQ---VGKKLWGVNL--SGGSGGLFFCGGWPKFVKENHLQPGDSCLFELVTK 482
                444444...333.2333333...45699*****..*******************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-218108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-198108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.54812107IPR003340B3 DNA binding domain
SMARTSM010196.0E-1613107IPR003340B3 DNA binding domain
PfamPF023621.4E-1317106IPR003340B3 DNA binding domain
CDDcd100171.62E-1520105No hitNo description
SuperFamilySSF1019361.65E-15243353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-13243351IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-18247349No hitNo description
SMARTSM010192.5E-6249351IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843249351IPR003340B3 DNA binding domain
PfamPF023621.1E-10251348IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13397483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14398482IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-11402480No hitNo description
SMARTSM010190.0018404499IPR003340B3 DNA binding domain
PfamPF023625.4E-10422482IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391443494IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MESTNFCPDT PHFHRMILQD SLFDNKLKIP KEFMVKYGSN IDTSKPIVVK VPGGGAWKMK  60
LTKCDGHIWL GEGWPSFARH YSIERGYSLF FRYEGQSRFH VVIIDANGSE ICYPAVVITT  120
SKHSDGTLNP TNIIVAQEED EEFDSHENLN RKRKEKLAPP FSSPKRRKKE FFVSSDNDDD  180
EYAAAAPPKD QVNMGDSECV ESVNKTGMIK ALAKKGGSRV EEHFRSITVE EKDEALFRIT  240
NLTSQYPYFK IVLKKMHLHD RYELALPAEF WRENVGEKSD LDVTLYVPHN GRTWLGKLQI  300
KARNGSPRAV FSIRCWREFA VENCLKLSDV CTFELTNKNE MMFKVSINRA TLCDQNNQQS  360
EGNVKLGAKS KDHTSDQVTQ GAFSSSRGGK FSEGATVKQS NPSFEIILGQ SAGKLKRIPL  420
YISNNFLQGK PGAVTIQVGK KLWGVNLSGG SGGLFFCGGW PKFVKENHLQ PGDSCLFELV  480
TKETDTDNTL LNATISRRIN PAAVSALLSY RT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RKRKEK
2150168RKRKEKLAPPFSSPKRRKK
3151168KRKEKLAPPFSSPKRRKK
4163169PKRRKKE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-31B3 family protein