PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10188.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 269aa    MW: 28366.2 Da    PI: 8.8088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10188.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003196118123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k F++   L  H  +H
  PK10188.1  96 YKCSVCNKAFPSYQALGGHKASH 118
                9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-1496120IPR007087Zinc finger, C2H2
SMARTSM003550.005796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15996123IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-996118No hitNo description
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-9149176No hitNo description
PfamPF139121.7E-13153178IPR007087Zinc finger, C2H2
SMARTSM003550.18154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNSPTTANPF YNEDAENLQF HEPWIKRKRS KRPRLEQPPS EEEYLALCLI MLARGGGGAG  60
RSGGSDNSTK TPSAATNDGG VSRLLPPQPP ALKLSYKCSV CNKAFPSYQA LGGHKASHRK  120
STNSSSDGGA SAAADNVSTS TVSTSVPVSS GRTHECSICH KTFPTGQALG GHKRCHYDGG  180
SGNSASGGGG GVTSSEGGAS SQSHSQSQIS QQRGFDLNMP ALPEFWPGFT IEVNNKKSQL  240
SGIDQEVESP LPMKKPRLSN QEEFGVSRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347118.15e-86PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A2P5DNE41e-115A0A2P5DNE4_PARAD; Zinc finger transcription factor
STRINGXP_009347118.12e-85(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-38salt tolerance zinc finger