PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10136.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 663aa    MW: 73197.4 Da    PI: 6.1247
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10136.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22144243197
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt+sd+++ g +++p+++ e++      g +++  +tl  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +   +++   v
  PK10136.1 144 FLKILTQSDANNGGGFSVPRQCGETIfppldyGANPPV-QTLFAKDVHGNVWKFRHIYRGTPRRHLLTTGWSTFVNDKKLVSGDSIVFCRA--NNGDVSV 240
                89*****************************9656554.49***********************************************944..5555577 PP

                EEE CS
         B3  95 kvf 97 
                ++ 
  PK10136.1 241 GIK 243
                665 PP
2Auxin_resp85.31.2e-28277361183
  Auxin_resp   1 aahaastksvFevvYnPrastse.FvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ ++ FevvY+P a ++e F+vk++ v++ +++++  GmRfk afe++dss+ ++ +Gtv++vs++dp+rWp+S Wr+L+
   PK10136.1 277 AANLAADGKLFEVVYYPNANNAEaFCVKASAVNRVMRRRWWYGMRFKKAFESDDSSRVNWfMGTVSSVSEVDPSRWPRSLWRVLE 361
                 78999**************99988**********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-34139248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29142253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-18143230No hitNo description
SMARTSM010194.7E-19144246IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393144246IPR003340B3 DNA binding domain
PfamPF023621.7E-20144243IPR003340B3 DNA binding domain
PfamPF065071.5E-24277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
XSLQFNSHIY TEERRNKKIE MNEGGDQGGE RSNVVVDPQL WNACAGRLVH VPSVNSKVFY  60
FPQGHADHAG INVDRFIDRK VPSQILCRVM AVEYKADSAT DEVFVKISLV PVSSGEEDLD  120
KSGGDEENVN ENDGDGGLEK PSYFLKILTQ SDANNGGGFS VPRQCGETIF PPLDYGANPP  180
VQTLFAKDVH GNVWKFRHIY RGTPRRHLLT TGWSTFVNDK KLVSGDSIVF CRANNGDVSV  240
GIKRVKRSCN EGGEIEESRI VNNRRVGKIR PESVIEAANL AADGKLFEVV YYPNANNAEA  300
FCVKASAVNR VMRRRWWYGM RFKKAFESDD SSRVNWFMGT VSSVSEVDPS RWPRSLWRVL  360
EVTWDDGNFL KNVKRINPWF VQLGNTHELL LSSLLPPRKK YRLSQSQQSD ITHDGGHDGG  420
QLPVSSPLAN NTLGVSIPLD YLSNNTPVGI QGARQISLQI SSSSTPGVCP GQSFEKSNQI  480
LLFGQCIDIE QRNCDSPPSF SQVTDGSGTE RSPSTTSTPA LHSTENEGLS SFLTIGNSGQ  540
SLEKSNIVGA NQFLLFGQCI DIGTERSPST ENGLNSGHCK ILIDSKDSGL SNDISGLGSY  600
EDLFKNLSDL IQIERSQIQN CVVYYDESGV AKRPEDVPFS DFMRTAKTIN ISTGPSESRE  660
RLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-762038736393Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
TrEMBLA0A2P5FTV90.0A0A2P5FTV9_TREOI; Auxin response factor
STRINGXP_008385323.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3209422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-164auxin response factor 10