PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10122.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 37822.7 Da PI: 4.699 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.7e-19 | 259 | 292 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG+++++ + PK10122.4 259 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 292 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.0E-78 | 21 | 332 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 4.0E-14 | 253 | 307 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-14 | 253 | 315 | No hit | No description |
PROSITE profile | PS50114 | 11.187 | 253 | 289 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 257 | 290 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.33E-13 | 258 | 315 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 259 | 284 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-16 | 259 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEGMEAKALR PSLRGELTQL EDFEEVYNNN NNGTGISCDD FSIDELLNLQ NGEFEEGSVE 60 EEEEEEEKDS LCVDEESLTL SGGSSGAGDS ESALTSELAV PDDDLAELEW VSHFVDDSFS 120 DFSLLHPIEK QSTEFHSENQ LEQPEPTRPG TNPTCFPSVP VKTRTKRARP TTQPWSRTNS 180 LSQLTESNST TSSSSSSSPP PCSASFSSNP CLIFNNNVVQ TMEFLRNLGE PPIKKPKKKP 240 AAVQAGAGAV VGPQFQRRCS HCQVQKTPQW RTGPLGPKTL CNACGVRFKS GRLFPEYRPA 300 CSPTFSSEVH SNSHRKVLEM RKKKEVVGSG SGPGPGSGSG LARVISSF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109771.1 | 1e-114 | GATA transcription factor 7 | ||||
TrEMBL | A0A2P5FQ07 | 1e-140 | A0A2P5FQ07_TREOI; GATA transcription factor | ||||
STRING | XP_010109771.1 | 1e-114 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-39 | GATA transcription factor 5 |