PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK10116.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 450aa MW: 51410.7 Da PI: 6.4372

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10116.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.3	7.5e-22	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d++ PK10116.1 122 KWTDHVVKLLIAVVACVGDDGMIAGgdgpkrksgilQKKGKWKTVSKIMIKKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDSM 218 7************999999865445666778888********************************************569999999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-18	120	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDNSGLGGGF LSGPNGGLLD LESSIHRHQT SQLGHSTLAH PHHMNIIGGI ESEHHPITLM 60 EVKGSTSKGI SVFGKGKAVA PMTSSHSYNM SEEDEPSYME DGSGENYDGA KGKKGSPWQR 120 MKWTDHVVKL LIAVVACVGD DGMIAGGDGP KRKSGILQKK GKWKTVSKIM IKKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPQ LSAKAKDDVK KILSSKHLFY 240 KEMCAYHNGQ MIPDCHDIDL QGCSLPLRCS KDSNPSEEDA EENHDSEEDD LDNDDDHHND 300 NDEERMRHFG DRKRMNDDDG HFWTSPQETF EGEMMGFFQD PTKSLWERKE WVEKQKLHLQ 360 EQRINFQAQA LELEKQRFRW LRYCSKKDRE LERLRLENER MRLENERKVL QLKQKELELD 420 LRRPEASLEH SPLGIDMVPG RDQIDLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDNSGLGGGF LSGPNGGLLD LESSIHRHQT SQLGHSTLAH PHHMNIIGGI ESEHHPITLM  60
EVKGSTSKGI SVFGKGKAVA PMTSSHSYNM SEEDEPSYME DGSGENYDGA KGKKGSPWQR  120
MKWTDHVVKL LIAVVACVGD DGMIAGGDGP KRKSGILQKK GKWKTVSKIM IKKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPQ LSAKAKDDVK KILSSKHLFY  240
KEMCAYHNGQ MIPDCHDIDL QGCSLPLRCS KDSNPSEEDA EENHDSEEDD LDNDDDHHND  300
NDEERMRHFG DRKRMNDDDG HFWTSPQETF EGEMMGFFQD PTKSLWERKE WVEKQKLHLQ  360
EQRINFQAQA LELEKQRFRW LRYCSKKDRE LERLRLENER MRLENERKVL QLKQKELELD  420
LRRPEASLEH SPLGIDMVPG RDQIDLGRHQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102326.1	0.0	uncharacterized protein LOC21398378 isoform X1
TrEMBL	A0A2P5EUL9	0.0	A0A2P5EUL9_TREOI; Sequence-specific DNA binding transcription factor
STRING	XP_010102326.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-68	sequence-specific DNA binding transcription factors