PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 594aa    MW: 65157.1 Da    PI: 8.7004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10087.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-0599121123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  PK10087.1  99 FVCEICNKGFQRDQNLQLHRRGH 121
                89*******************88 PP

2zf-C2H215.35.5e-05175197123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H++t+
  PK10087.1 175 WKCDKCSKKYAVQSDWKAHQKTC 197
                58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.62E-898121No hitNo description
Gene3DG3DSA:3.30.160.602.0E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94999121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM0035595140170IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-5163196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.62E-8170196No hitNo description
SMARTSM0035594175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
XEGSFSSGNN NNNNNNIHII NSSTTTTGDE EVIQGNNNHH HQKKQIPISS TNSNDSSSHH  60
QQQQSVLLPK KKRNLPGTPD PNAEVIALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLRQR TTTEVKKRVY ICPEPTCVHH NPTRALGDLT GIKKHFSRKH GEKKWKCDKC  180
SKKYAVQSDW KAHQKTCGTR EYKCDCGTIF SRRDSFITHR AFCDALAEEN NKVNQGLMNN  240
NNMNMGPNLL SQQTQMPDLM PSMPLTTNTS INGLSDFKSI PQELIPMPYN KPMNNMAPGG  300
MFSTSSGPLF GSPRGISTSS ASSLQLSSNS SSGFNYLQDN KNASGPILAA GSAHMSATAL  360
LQKAAQMGAT ASSSSINSPM IQKSFSSTSS MAGPHIPPHH DQLSHVKQAQ AQAQMQLHHI  420
NPAYDHHFQS QPSDPSSMVD INGREGGFNP THKSHQELPH SFGPNNNHDM GMYSQMFLNN  480
TSATTILEQE DSSTNSSSMH GKFSTERNIT GLSRFAETGG GGGGGGGGNG DGDRIMVDFM  540
GIGESRPTNG MHDHHQLEVM RQNRMPPMMN NHTFQQQVSH GDSGMEKSSI WGDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35171241372Zinc finger protein JACKDAW
5b3h_F5e-35171241372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675074.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-115IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2P5FFN80.0A0A2P5FFN8_TREOI; TFIIH C1-like domain containing protein
STRINGcassava4.1_030413m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-98indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]