PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 594aa MW: 65157.1 Da PI: 8.7004 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PK10087.1 99 FVCEICNKGFQRDQNLQLHRRGH 121 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.5e-05 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PK10087.1 175 WKCDKCSKKYAVQSDWKAHQKTC 197 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.62E-8 | 98 | 121 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 98 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 95 | 140 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.1E-5 | 163 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.62E-8 | 170 | 196 | No hit | No description |
SMART | SM00355 | 94 | 175 | 195 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
XEGSFSSGNN NNNNNNIHII NSSTTTTGDE EVIQGNNNHH HQKKQIPISS TNSNDSSSHH 60 QQQQSVLLPK KKRNLPGTPD PNAEVIALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG 120 HNLPWKLRQR TTTEVKKRVY ICPEPTCVHH NPTRALGDLT GIKKHFSRKH GEKKWKCDKC 180 SKKYAVQSDW KAHQKTCGTR EYKCDCGTIF SRRDSFITHR AFCDALAEEN NKVNQGLMNN 240 NNMNMGPNLL SQQTQMPDLM PSMPLTTNTS INGLSDFKSI PQELIPMPYN KPMNNMAPGG 300 MFSTSSGPLF GSPRGISTSS ASSLQLSSNS SSGFNYLQDN KNASGPILAA GSAHMSATAL 360 LQKAAQMGAT ASSSSINSPM IQKSFSSTSS MAGPHIPPHH DQLSHVKQAQ AQAQMQLHHI 420 NPAYDHHFQS QPSDPSSMVD INGREGGFNP THKSHQELPH SFGPNNNHDM GMYSQMFLNN 480 TSATTILEQE DSSTNSSSMH GKFSTERNIT GLSRFAETGG GGGGGGGGNG DGDRIMVDFM 540 GIGESRPTNG MHDHHQLEVM RQNRMPPMMN NHTFQQQVSH GDSGMEKSSI WGDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 171 | 241 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 171 | 241 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675074.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-115 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2P5FFN8 | 0.0 | A0A2P5FFN8_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | cassava4.1_030413m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-98 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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