PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09859.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 64aa MW: 7250.15 Da PI: 8.5113 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 46.8 | 5.2e-15 | 2 | 64 | 297 | 360 |
GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360 +++ceg +r+erhe++ +Wr+r+++aGF++ p++ + +ak l +++ +gy+v ee+g+lvl PK09859.2 2 IISCEGPARVERHERVDQWRRRMSRAGFQAGPIK--MLGSAKQWLGQIEaCEGYTVVEEKGCLVL 64 89******************************96..678899999999999************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.681 | 1 | 59 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-12 | 2 | 64 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
XIISCEGPAR VERHERVDQW RRRMSRAGFQ AGPIKMLGSA KQWLGQIEAC EGYTVVEEKG 60 CLVL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028947963.1 | 2e-34 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2P5B9Z6 | 3e-33 | A0A2P5B9Z6_PARAD; GRAS transcription factor | ||||
TrEMBL | A0A2P5EIF5 | 3e-33 | A0A2P5EIF5_TREOI; GRAS transcription factor | ||||
STRING | XP_008239620.1 | 2e-33 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25456 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 3e-14 | GRAS family protein |