PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10225 Da PI: 10.8364 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 5 | 35 | 14 | 46 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++ G++ W+ Ia+ ++ gRt++++k++w++ PK09803.1 5 KLHAAIGSR-WSMIAQQLP-GRTDNDVKNYWNT 35 578889999.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.85 | 1 | 41 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-15 | 5 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.16E-10 | 5 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-8 | 5 | 35 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-7 | 13 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
LFRSKLHAAI GSRWSMIAQQ LPGRTDNDVK NYWNTKLRKK LSEMGIDPVT HKPFSQIIAD 60 YGNVGGLPKT GMRIGSLNKD LKNAILMKMD P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663429.1 | 2e-48 | PREDICTED: transcription factor MYB35 | ||||
Swissprot | Q9XHV0 | 1e-25 | MYB80_ARATH; Transcription factor MYB80 | ||||
TrEMBL | A0A2P5F676 | 6e-53 | A0A2P5F676_TREOI; MYB transcription factor | ||||
STRING | EOY20284 | 9e-49 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 4e-28 | myb domain protein 103 |