PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRF | ||||||||
Protein Properties | Length: 365aa MW: 41427.9 Da PI: 8.2379 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.3e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e PK09793.1 78 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP | |||||||
2 | QLQ | 57.3 | 4.7e-20 | 8 | 42 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ ++ PK09793.1 8 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFTLK 42 8*****************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.7E-11 | 7 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.935 | 8 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-15 | 8 | 40 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.156 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.4E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSGKTRFPFT ASQWQELEHQ ALIFKYMVSG IPIPPDLLFT LKRSYLDSTA VLPSKLFPHH 60 SQHVGWNCFQ MGLGRKIDPE PGRCRRTDGK KWRCSKEAFP DSKYCERHMH RGKNRSRKPV 120 EVLKTTGTNS NLSNPSTLVS SNKNLSNNSL SSLTSLPSES QNRHLHPYHN PHLDHQQQPF 180 SVYNHSSSSS SRPNGIGLSS QDSNTSLLFD SGSYSNADLR YVYGLKDDVD EHSFFSEEPS 240 RTHVRDLSMD ESWQLTPLTM SCSSSSSKQR SCSGLQSEHS YLQLQSSNHC DLRRNDVKME 300 RKEATQKTIH FIDEWPVKEK DSSWLELDDK SSNSGSVSTT QLSISIPTSS YDFPIFNTCR 360 THNGD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009846 | 2e-47 | AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024932189.1 | 1e-141 | growth-regulating factor 5-like isoform X7 | ||||
TrEMBL | A0A2P5BXX4 | 0.0 | A0A2P5BXX4_PARAD; Growth-regulating factor | ||||
STRING | XP_008242216.1 | 1e-133 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-56 | growth-regulating factor 5 |