PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09728.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 157aa    MW: 17850.5 Da    PI: 4.591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09728.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-11681263796
                EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + + + ++W++ +  +++s+    + + Wk+F+++n+L+ +D +vF+l+++s+++lv+kv
  PK09728.1  68 AVLTYKRNKWTMLF--NGTSQLlKRFDNSWKNFAEDNKLEINDACVFELIENSSTNLVFKV 126
                456678899****9..99998777899*************************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1329130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-1531126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1434130No hitNo description
SMARTSM010193.3E-435132IPR003340B3 DNA binding domain
PROSITE profilePS508639.68636132IPR003340B3 DNA binding domain
PfamPF023621.9E-942126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDELLSNESS NRSTTCNEEG EEDEELCPIS GKNPFFSLFM SKSNLNPNYR LVLPAKIHPV  60
LPSLIIPAVL TYKRNKWTML FNGTSQLLKR FDNSWKNFAE DNKLEINDAC VFELIENSST  120
NLVFKVQILR GDLPTELLPK IIETKMVGTV ESPIVIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097681.19e-47B3 domain-containing protein Os04g0386900
TrEMBLA0A2P5CRU42e-47A0A2P5CRU4_PARAD; B3 DNA binding domain containing protein
STRINGXP_010097681.14e-46(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-07B3 family protein