PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09702.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 493aa    MW: 54632.8 Da    PI: 4.9979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09702.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.8e-15271318355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++h ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  PK09702.1 271 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 318
                5899***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.638268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-20270343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-12271317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-15272322No hitNo description
Gene3DG3DSA:4.10.280.101.3E-19272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-18274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
XAIYSGPAGA AGPAIEETNK EDEGDEDQED EMDEEEDEEV GESDSEAEIG RIGGPKNSSV  60
EAVVAAAEPS ELMQLDMSED IRLGSPDDGS NNLDSDFHLL AVSQRKRHDH LCQPNSYPAE  120
STPRWPLLPD HPTTNIGLLL PPSSGPTNPL EDIAHEDTHY SETVSAILQN QPSCLWAESS  180
SSGYVTYSTQ SAFSKWTNLN DHHSIFHVSS SSSSSESTSQ WLLKYILFSV PLLHTKYRDE  240
NSPKGSAGVG VDTATRAFRN KGGTPQDELS ANHVMAERRR REKLNERFII LRSLVPFVTK  300
MDKASILGDT IEYVKQLRKK VQDLETRNHL MELDQRSLMM PVVPQRTCST GSLKDQRSGL  360
TIVDRVRIEP PGSEKRKMRI VEGSHGVVAK PKSVESSASP PLSPRSETTV QVSIIENDGL  420
LELQCPYREG LLLELMQMLK ELRIETTTVN SSLSNGFFAI ELRAKVKENV HGRKASIVEV  480
KRAINQIIPH RDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-15272333874Transcription factor MYC2
5gnj_B1e-15272333874Transcription factor MYC2
5gnj_E1e-15272333874Transcription factor MYC2
5gnj_F1e-15272333874Transcription factor MYC2
5gnj_G1e-15272333874Transcription factor MYC2
5gnj_I1e-15272333874Transcription factor MYC2
5gnj_M1e-15272333874Transcription factor MYC2
5gnj_N1e-15272333874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281ERRRRE
2277282RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892114.10.0basic helix-loop-helix protein A
SwissprotE3SXU41e-138BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLG7ZLA20.0G7ZLA2_HUMLU; Basic helix-loop-helix transcription factor
STRINGEMJ019100.0(Prunus persica)
STRINGXP_010090392.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-32bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]