PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09701.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 660aa MW: 73422.5 Da PI: 8.2874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09701.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	103	124	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H PK09701.1 103 KCDKCSREFCSPINYRRHIRVH 124 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.118	102	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	102	124	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	104	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MPIAKLKAAN TLDVMKPEEG NDSLDAIIKQ AIGKESFLNF SRAGDSSAQF IQLLHALEQQ 60 GSSSRIESLS TPTIFGKHEA HSYLSDHHQS WSLVSPTKIQ MQKCDKCSRE FCSPINYRRH 120 IRVHHRLKKL DKDSAKSRDM LGAFWDKLPL EDAKEVVSFK NEEEVPGSSI IKALSSHVRK 180 SVFSSPPHPY LKAGAELLDI VQARPSKFPI SSQELFNVLD LASEKTFLSG PAASMQRYVF 240 DGEAGKIGLE AKNLVACTSF LLEQKLVKAW LAEKDAEALR FQKLLVEEEE AAQKRQAELL 300 ERKKQKKLRQ KEQKAKERRH EEKADSDESI DLVLEEMAPV EASSQAECDN SIDSLDLPNH 360 IPLSIVDHFN SDGNLDSDFQ IDSDCGQVDS GSSSSVEKRI AQGSGRWKRW QMSPKSQWVA 420 SNGSQSSKLG VHHNRGTHKD SRVGVSSHKV WSRKSKPETN IDALKARVKK EELNDLDQIN 480 NREVLIGSIS VTLGNCSEEG NNLSEPCDTC LTEHQLPKNS VQAKPNKSNP VRSGTSRSTV 540 KHWRPVSRNG TKVPNGEKGH TESLLNGNSE FSSHAAQVFL AQRWKEAIAA DHVKLVITSD 600 SFPLDENDTH ETASQTLKLR RRCILGDAEN RLVNVDIVGS STTGKGNKIK EISKQRSNPT

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MPIAKLKAAN TLDVMKPEEG NDSLDAIIKQ AIGKESFLNF SRAGDSSAQF IQLLHALEQQ  60
GSSSRIESLS TPTIFGKHEA HSYLSDHHQS WSLVSPTKIQ MQKCDKCSRE FCSPINYRRH  120
IRVHHRLKKL DKDSAKSRDM LGAFWDKLPL EDAKEVVSFK NEEEVPGSSI IKALSSHVRK  180
SVFSSPPHPY LKAGAELLDI VQARPSKFPI SSQELFNVLD LASEKTFLSG PAASMQRYVF  240
DGEAGKIGLE AKNLVACTSF LLEQKLVKAW LAEKDAEALR FQKLLVEEEE AAQKRQAELL  300
ERKKQKKLRQ KEQKAKERRH EEKADSDESI DLVLEEMAPV EASSQAECDN SIDSLDLPNH  360
IPLSIVDHFN SDGNLDSDFQ IDSDCGQVDS GSSSSVEKRI AQGSGRWKRW QMSPKSQWVA  420
SNGSQSSKLG VHHNRGTHKD SRVGVSSHKV WSRKSKPETN IDALKARVKK EELNDLDQIN  480
NREVLIGSIS VTLGNCSEEG NNLSEPCDTC LTEHQLPKNS VQAKPNKSNP VRSGTSRSTV  540
KHWRPVSRNG TKVPNGEKGH TESLLNGNSE FSSHAAQVFL AQRWKEAIAA DHVKLVITSD  600
SFPLDENDTH ETASQTLKLR RRCILGDAEN RLVNVDIVGS STTGKGNKIK EISKQRSNPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	307	ERKKQKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029209.1	0.0	uncharacterized protein LOC21389944 isoform X2
TrEMBL	W9SNP6	0.0	W9SNP6_9ROSA; Uncharacterized protein
STRING	XP_010108360.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-121	C2H2-like zinc finger protein