PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK09561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25636.8 Da PI: 10.6783 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.2 | 2.7e-17 | 130 | 216 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++s+v+ +l lp +f++++ +k ++ +tl de+g++ + + rk++ l++GWk+F+ a++L +gD ++F+l++ s f +v PK09561.1 130 FIKTMLQSHVTGGFWLGLPVHFCRKNL-PK-RDEVMTLIDEDGEEHKTVYLARKTG----LSGGWKGFAVAHNLVDGDALIFQLIRPSAF--KVF 216 89*********************9994.33.5568***************656665....*************************98888..444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 122 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-25 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.06E-27 | 128 | 219 | No hit | No description |
SMART | SM01019 | 2.0E-23 | 130 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.857 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-15 | 130 | 217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MVMAKSKISY EESRRQRLEE NKQRMEALNL TMLAQSLRNS SPSKLSPMKS VKKPRTMEKQ 60 VVMVRRSSRV ANKPIPVYNE VVIERVVIPR RISKHRDLSN RVYASDEART NALERAEKLL 120 SELESEYPIF IKTMLQSHVT GGFWLGLPVH FCRKNLPKRD EVMTLIDEDG EEHKTVYLAR 180 KTGLSGGWKG FAVAHNLVDG DALIFQLIRP SAFKVFIIRV NSQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092061.2 | 1e-119 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-77 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A2P5ASS8 | 1e-136 | A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein | ||||
STRING | EOY14512 | 1e-117 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-77 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|