PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09548.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 81aa    MW: 9563.71 Da    PI: 6.3389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09548.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-122623699
               EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               + l+ + g  Wev+l  + ++g+++++kGW +F+    L  g f+vF+++g+s f  +v +f++
  PK09548.1  2 VFLRVPCGSIWEVEL-TKSNDGKVWMEKGWDKFALHFSLSRGNFLVFRYEGDSHF--HVIIFDT 62
               567778899******.3555666****************************9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.10E-12161No hitNo description
PROSITE profilePS5086313.239163IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-16273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16262IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-9262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
QVFLRVPCGS IWEVELTKSN DGKVWMEKGW DKFALHFSLS RGNFLVFRYE GDSHFHVIIF  60
DTTNTEIDYP HSSNHFEKQN V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472260.19e-25PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P5FY039e-27A0A2P5FY03_TREOI; B3 DNA binding domain containing protein (Fragment)
STRINGXP_010113419.12e-26(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-17B3 family protein