PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 190aa MW: 21778.3 Da PI: 11.0645 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.3e-32 | 125 | 178 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PK09499.1 125 PRMRWTTSLHSRFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 178 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.73E-16 | 122 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-29 | 123 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 125 | 178 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-8 | 126 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
XPWIRRIDNF PSRSERKQSS SSSSPTRFSS DNHQMKTKTI KGIPIYNNNN TPSDQLRLRS 60 DGAVCFGGGY SKLYYSHQQI PPYPNLLPIS LPSSRVYNPS MENRVHHHHN HNQFGNNSKR 120 NMRAPRMRWT TSLHSRFVHA VQLLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK 180 NTDKPMASSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 126 | 180 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088450.1 | 6e-45 | transcription repressor KAN1 isoform X1 | ||||
Swissprot | Q9C616 | 9e-40 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A2P5E159 | 6e-45 | A0A2P5E159_PARAD; KANADI transcription factor | ||||
STRING | cassava4.1_008805m | 4e-43 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-40 | G2-like family protein |
Publications ? help Back to Top | |||
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