PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09461.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family YABBY
Protein Properties Length: 150aa    MW: 17160.2 Da    PI: 10.3999
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09461.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1372.3e-42912164170
      YABBY  64 deslkeelleelkveeenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaa 157
                + +  ++l++++ + +++   + + + s+s+ + +++l      +  ++ ++++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aa
  PK09461.1   9 SWQQDHHLQAQNYNYNNSAPDYRIDSGSSSRCNINTRLamraptTATTTTNITEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAA 108
                4444455555555555555555555555555544444455665555666777777789****************************************** PP

      YABBY 158 knWahfPkihfgl 170
                knWahfP+ihfgl
  PK09461.1 109 KNWAHFPHIHFGL 121
                ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.2E-4113121IPR006780YABBY protein
SuperFamilySSF470952.88E-865114IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.8E-569115IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAAAFQSLSW QQDHHLQAQN YNYNNSAPDY RIDSGSSSRC NINTRLAMRA PTTATTTTNI  60
TEERVVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG  120
LMLKTNNQTK LENNGSEKHL MPSRAALLNK
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105229.13e-85axial regulator YABBY 5
SwissprotQ8GW463e-49YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A2P5EU471e-90A0A2P5EU47_TREOI; YABBY protein
STRINGXP_010105229.11e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-49YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]