PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09435.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 145aa MW: 17154.6 Da PI: 5.6733 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 72 | 113 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++av+q G++ ++ I + ++ +Rt++q+k+++ k PK09435.2 72 RWSKNDTELFYEAVRQIGTD-FTIIQQLFP-NRTREQVKLKFKK 113 9*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 6.2E-28 | 63 | 131 | No hit | No description |
PROSITE profile | PS51293 | 9.449 | 68 | 116 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-8 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 70 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.84E-11 | 71 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.85E-7 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
XIKDAAKLKT EQTNQSTEDN FREDVSHNEE MFHSEQGEQG QNSDDNQPTY RAQPSSTYVN 60 YHSFMDRTPS TRWSKNDTEL FYEAVRQIGT DFTIIQQLFP NRTREQVKLK FKKEERQHPL 120 RLSDALTNRT KGEEILIYCA SLYFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 9e-13 | 44 | 126 | 56 | 135 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 9e-13 | 44 | 126 | 56 | 135 | Transcription factor TFIIIB component B'' homolog |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027250.1 | 3e-51 | uncharacterized protein LOC21392104 | ||||
TrEMBL | A0A2P5DVP6 | 2e-52 | A0A2P5DVP6_TREOI; TFIIIB transcription factor | ||||
STRING | XP_010105352.1 | 3e-45 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.2 | 4e-29 | MYB_related family protein |