PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09358.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 357aa MW: 38638.9 Da PI: 7.9323

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09358.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.2e-39	111	167	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + +kcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk PK09358.1 111 ALVKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKK 167 6789***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	112	167	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-25	113	167	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	113	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	115	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
XVICLATAFS SHLLIFFIII IIIFLFFFTI DNVGGDATTD LTGNPATNYT INSTTTTAHV 60 GSSRPSSGAG GGGSNSSGSS TEDLALNRRR LLAEQQQQQQ QQRLRPPNDN ALVKCPRCES 120 THTKFCYYNN YSLTQPRYFC KTCRRYWTKG GTLRNIPVGG GCRKNKKPAP KKTNDNNSAV 180 VLINTKNNHN NGGGDDIGGS TSTTDLKLSF PDQVQFSHLS NLLGTHGPGP NSFFESPRPI 240 DFGMVGIGLG NISNSSSHHH GIIEPNNFHG LCSPFGMSLD GTGTGTFMDT CQRIMMSYEG 300 NDDDQKYGID VKPNAKLLAL DWQDHGGCTD AGKDSFGYLN SLGLMNNYGP PTMNPLV

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

XVICLATAFS SHLLIFFIII IIIFLFFFTI DNVGGDATTD LTGNPATNYT INSTTTTAHV  60
GSSRPSSGAG GGGSNSSGSS TEDLALNRRR LLAEQQQQQQ QQRLRPPNDN ALVKCPRCES  120
THTKFCYYNN YSLTQPRYFC KTCRRYWTKG GTLRNIPVGG GCRKNKKPAP KKTNDNNSAV  180
VLINTKNNHN NGGGDDIGGS TSTTDLKLSF PDQVQFSHLS NLLGTHGPGP NSFFESPRPI  240
DFGMVGIGLG NISNSSSHHH GIIEPNNFHG LCSPFGMSLD GTGTGTFMDT CQRIMMSYEG  300
NDDDQKYGID VKPNAKLLAL DWQDHGGCTD AGKDSFGYLN SLGLMNNYGP PTMNPLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021292203.1	3e-99	dof zinc finger protein DOF5.6
TrEMBL	A0A2P5AF62	1e-113	A0A2P5AF62_PARAD; Zinc finger, Dof-type
STRING	EOY20732	5e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-32	TARGET OF MONOPTEROS 6