PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26383.5 Da PI: 9.2656 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.8 | 2.5e-10 | 2 | 30 | 61 | 89 |
E-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 61 ltkGWkeFvkangLkegDfvvFkldgrse 89 +++GWk Fv++n+Lk+gD++vF l +rs+ PK09356.1 2 IESGWKAFVQDNDLKVGDVCVFVLRKRSG 30 579********************877543 PP | |||||||
2 | B3 | 35.6 | 1.6e-11 | 140 | 232 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+ +l+p + ++++++p +a+ +kk++ t+tl W v+++ +k s+ y +++GW+ F+++n L+ D+++F l+++++ e PK09356.1 140 FQVKLKPYNLRGHAQVYIPLAYANPWFEKKPQ--TVTLWV-GEDYWHVTVTLNKASNIggleYRFSAGWRAFARDNSLNPSDVCIFDLIKKNKPEI 232 6677777777778999******9776766555..666554.668899999888888878889*************************998544433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.082 | 1 | 42 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-7 | 2 | 29 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.48E-10 | 2 | 39 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-9 | 2 | 40 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-9 | 3 | 39 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 135 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-15 | 135 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-13 | 138 | 228 | No hit | No description |
PROSITE profile | PS50863 | 10.489 | 140 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-8 | 140 | 231 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
XIESGWKAFV QDNDLKVGDV CVFVLRKRSG VILFEVVIFY DNGLANSPIQ QIPAANKTSS 60 TPCVKIEPSS TSNNYDKAIM IPHDIIANKK VIEPSEKFTK PVSEENTGNQ GTNNNKRPSS 120 SGLGIASEAA IKFFSDNPYF QVKLKPYNLR GHAQVYIPLA YANPWFEKKP QTVTLWVGED 180 YWHVTVTLNK ASNIGGLEYR FSAGWRAFAR DNSLNPSDVC IFDLIKKNKP EIKVTX |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14300 | 4 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 9e-12 | related to vernalization1 1 |