PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09321.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family STAT
Protein Properties Length: 707aa    MW: 79346 Da    PI: 5.0484
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09321.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT180.62.2e-562163361121
       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypflea 100
                ldvv+l++  qpv+k++evvasL+y d+g++ve+++d eapLL+s+dG+ef+s+d+p+kll+GrasfklkisqLsskc nrLf+i+f++p+++ ypf+ea
  PK09321.1 216 LDVVFLDTSDQPVSKEIEVVASLVYLDNGAPVERTSDGEAPLLASFDGIEFASYDKPSKLLHGRASFKLKISQLSSKCQNRLFCIRFHLPNMEIYPFFEA 315
                89************************************************************************************************** PP

       STAT 101 vskpirCisrsrntrsssltk 121
                +s pir isr+rntr ss++ 
  PK09321.1 316 FSPPIRSISRNRNTRVSSTMS 336
                ***************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498996.13E-619165IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.102.0E-6601687IPR000980SH2 domain
SuperFamilySSF555509.44E-8603672IPR000980SH2 domain
PROSITE profilePS5000110.152608707IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MERDNYLALK DLRLEIERED ENFSVCFWIY LTNSTAFPVT LLQKVPQDGS GHSPFLVINE  60
KEVMLFPLLP LNNEAQNSSN PASSSEVPCA SVETEFPLEK WVHFGCEVLT DCILLHIDGE  120
CVGEKSLSSI SEKDCAVNSP GKITLVGGGG DEANEQGYIY KLEILRTTSS IKDHFAKDPP  180
VQLSIDKSSA SEIEECQGGV WSIIGGKASC RRNFSLDVVF LDTSDQPVSK EIEVVASLVY  240
LDNGAPVERT SDGEAPLLAS FDGIEFASYD KPSKLLHGRA SFKLKISQLS SKCQNRLFCI  300
RFHLPNMEIY PFFEAFSPPI RSISRNRNTR VSSTMSKRSN SVPHQVSQSH GVDEDMMDVD  360
QNSSHETKPN PSSKRSKLGQ DRISTTFRVD PTLEAHDDEC NSHTKTAHNK VEDTLMTSST  420
VDPDNFDEDN SSTDSESIEA RNSAPKSTSS SRNPIPDATI FKYCLAGLAE RSLLLKEIAN  480
SASNKELLDF ANQVSLYSGC SHHRNQIIMA KRLVEEGKKA WNSISPNNNR VQWECVVFVI  540
EEHFMKIACC SSRSLTQQDF NLLKRIAGCE EYLTQENFER MWCWLYPVAY TLSRDWINTA  600
WSSTSPRWIE GFITKEEAEL SLQGPKGFQE PGTFILRFPT SRSWPHPDAG SLVVTYIGSD  660
YTLHHKLLSL DHLYSNCASE DKDVKPLQDM LLEEPELTRL GRIIRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028241.10.0SH2 domain-containing protein A
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2P5D9360.0A0A2P5D936_PARAD; STAT transcription factor
STRINGXP_010106738.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]