PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 37094.6 Da PI: 8.1731 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sF + L H++ H PK09091.1 4 HRCKLCHRSFANGRALGGHMKAH 26 79******************998 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 240 | 262 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H PK09091.1 240 FECPYCYKVFGSGQALGGHKRSH 262 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.9E-7 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.11E-7 | 3 | 26 | No hit | No description |
SMART | SM00355 | 0.057 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.11E-7 | 196 | 221 | No hit | No description |
SMART | SM00355 | 46 | 201 | 221 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.5E-4 | 201 | 221 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.99E-5 | 236 | 264 | No hit | No description |
SMART | SM00355 | 0.17 | 240 | 262 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.0E-13 | 240 | 262 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 240 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 242 | 262 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MERHRCKLCH RSFANGRALG GHMKAHLATL PLPPKNPEPA SSSSSDPDAD DNKSLALAYG 60 LRENPKKSFR LADPEFSFPA ADNGSVVIQD RESETESRNP TRRRSKRNRR PNALKRIPSW 120 VVVDSVPLTE TEPVSSVSDT SPEEDVAMCL MMLSRDVWEQ EEQVIKTVTL KKSMTDDEED 180 EVIVKRLKRV NNNSNNGVAK HKCDMCKKVF RSHQAMCGHK KICSMNENQE KEGVKDNKIF 240 ECPYCYKVFG SGQALGGHKR SHQLNSSSSS ATATTTTATT AKPIIIITST STTTTTTTNT 300 TLTDNSVKHR HHSGLIDLNL PAPLDDDDFS VLSDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 109 | RNPTRRRSKRNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299433.1 | 1e-101 | PREDICTED: zinc finger protein ZAT4 | ||||
TrEMBL | A0A2P5F5H3 | 1e-107 | A0A2P5F5H3_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_004299433.1 | 1e-101 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-33 | C2H2-like zinc finger protein |