PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09020.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 892aa    MW: 98765.3 Da    PI: 6.818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09020.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18328426197
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv++ 
  PK09020.1 328 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLKIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDTVTFSRID-PGGKLVMGY 425
                99**************************555556677***************9989999999***9.********************887.777677665 PP

                E CS
         B3  97 f 97 
                +
  PK09020.1 426 R 426
                4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-29324431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20325427IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-23326427No hitNo description
PROSITE profilePS5086310.461328429IPR003340B3 DNA binding domain
SMARTSM010197.7E-22328428IPR003340B3 DNA binding domain
PfamPF023626.1E-16328425IPR003340B3 DNA binding domain
PROSITE profilePS5105014.075593643IPR011124Zinc finger, CW-type
PfamPF074961.5E-11598640IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MGTRICMNAS CGSTRTLEWK KGWTLRSGGY AHLCHSCGSA YENSIFCERY HLDETGWRDC  60
SSCGKRIHCG CIASKSLFEC LDFGGVGCIN CATSSRHRLI QIDEAAKGFG GSNDAGESQS  120
TIVQTRIVGD AVDEGRLMQL CKIMEANEPN ILPRFQQAEI NAFSQTKRDD MMHQLGDVGR  180
EFSSLTQSSI GSLTFSKPNN NKTLLEVKDS HESHLQPSLN MTLGTPSRTS SFVLPYTGGA  240
VDGKELSKTP SPSFEPHRSR PILPKPFKSG INASSESNKT VVPHMRIARP PGDGRGKNQL  300
LPRYWPRITD QELEQLSGDL NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQS  360
EGLPLKIQDV KGNEWTFQFR FWPNNNSRMY VLEGVTPCMQ SMQLQAGDTV TFSRIDPGGK  420
LVMGYRKALN TEDAQEAQAP ILPNGTLGET SNSGGGTENL STGNGCSGLL QTNKGSKDSR  480
VNAMPEQLHL TDEDLGLRKT ETNGCNTNED SLQQQVTKLE KKKTRNIGSK SKRLLMHNED  540
ALELRLTWEE AQDLLRPPPS VKPSIVTIDD HDFEEYDEPP VFGKRTIFVS RPTGDQEQWA  600
QCDDCSKWRK LPLEVLLPSK WTCPDNAWDS NRASCSAHEE ISLKELENLL RSSKEFKKRR  660
TTENNKMVQE HEPSGLDALA SAAVLGDNVG DSGEPSVGAT TRHPRHRPGC TCIVCIQPPS  720
GKGKHKPTCT CNVCMTVKRR FKTLMLRKKK RQSERDTEAA QKDDNQCKED RGALLITNYM  780
ENEGIHCRVQ ADVAESSAGQ IDLNCHPSRE DMQPEVPELM MMGIVQAASC QLENYMKQIP  840
SMMYEQQPTL GSSLLSKATG EGGRDLSDEG CRASAWERES RVDGIYRDPK LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-723064352131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1737748KRRFKTLMLRKK
2737750KRRFKTLMLRKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108467.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_024029306.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_024029307.10.0B3 domain-containing transcription repressor VAL1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLW9SAB70.0W9SAB7_9ROSA; B3 domain-containing protein
STRINGXP_010108467.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]