PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 147aa MW: 16837.1 Da PI: 9.9671 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.4 | 9.3e-07 | 1 | 40 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 RRdr+N++f eL ++ + +K +Ka+iL Av+ + +L PK08792.1 1 RRDRLNERFLELVAVMELG---KLPKTDKAAILSDAVRIMTQL 40 9**************9999...9***************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00010 | 1.8E-4 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.353 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 1 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-8 | 1 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 4.6E-5 | 58 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
RRDRLNERFL ELVAVMELGK LPKTDKAAIL SDAVRIMTQL RSESRQMKQT IDDLQDKIKE 60 LKDEKNELRV ERQRLREEKE RLEQQVRIVA MSSHHHQTST FLPPAISRAS AVQGQNAGAT 120 NNNLLSFVSY PSGSGSLTMW EPSNYTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029985.1 | 1e-55 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 4e-39 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2P5BT23 | 5e-55 | A0A2P5BT23_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010109550.1 | 5e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-27 | bHLH family protein |