PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25975.1 Da PI: 5.1105 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.5e-10 | 79 | 127 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+r+N++f L +l ++ + K +K +iL Av+ +++L PK08705.1 79 GTKACREKMRRERLNDRFLDLSAVLEPD---RPAKTDKTAILDDAVRVLNQL 127 57889**********************9...99****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.89E-8 | 74 | 132 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-12 | 75 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.379 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 77 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 79 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-9 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDSLDNGNWD FLDCSFIGET QSSDFLWSNN SIMEVDFSGG GGGGAGNNGE GEGDSNLQER 60 DEKECSRKRV RTDSCRKQGT KACREKMRRE RLNDRFLDLS AVLEPDRPAK TDKTAILDDA 120 VRVLNQLKSE NQELKETNEK LLEEIKSLKA EKNELREEKL VLKSDKEKME LQLKSMAMPH 180 SGYMQAHPAA AAYQNKMAVF PGYSLVPMWN YLPPATRDTS RDHELRPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019435.1 | 1e-118 | transcription factor bHLH104 isoform X1 | ||||
Swissprot | Q8L467 | 3e-77 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2P5ECT2 | 1e-117 | A0A2P5ECT2_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010093421.1 | 1e-115 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 4e-71 | bHLH family protein |