PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 29775.2 Da PI: 9.4408 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.8e-18 | 10 | 79 | 16 | 86 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT...HHHHHHHHT--TT-EEEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkG...WkeFvkangLkegDfvvFkldg 86 ++p kfae+++ k+ +k+++++de+g+ W++ + +kk +++++ +G W+eFvk+++Lk gDf+vFk+ PK08578.1 10 SWIPPKFAEKFM--KRIPKEVKVKDENGKNWSFGM--KKKEEKVYIVNGkcqWEEFVKEHKLKRGDFLVFKYYT 79 48*********8..45899****************..99*999999977777*******************653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.72 | 1 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-6 | 1 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-16 | 10 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-17 | 11 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-17 | 11 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.91E-17 | 12 | 92 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-9 | 156 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.71 | 156 | 254 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-8 | 157 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.036 | 159 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
LDRPMCSKES WIPPKFAEKF MKRIPKEVKV KDENGKNWSF GMKKKEEKVY IVNGKCQWEE 60 FVKEHKLKRG DFLVFKYYTS IANSNFFHVK IYACNGCNKK QLHHKTTITQ PGEHDEDIKP 120 TDEELEKVGE NFSNEEEYGD VKTNTTTPPS NSISSNLHFL TIINDNTRKK VKIPSGVVSK 180 VKLEEKILLH CKNNELFGVG ITYDKDGQAF ISSKWSHFLK RKNLNNNDKC LFEFLINPKF 240 NICREMKVYI IHTW |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14322 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 4e-12 | B3 family protein |