PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08321.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 152aa    MW: 17515.3 Da    PI: 10.3892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08321.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-17110151146
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                ++++GVr+++ +grW+AeIrd +     r +r++lg+f+tae+Aa ++
  PK08321.1 110 PKFRGVRRRP-WGRWAAEIRDpF-----RrTRVWLGTFDTAEQAALMY 151
                79********.**********66.....45***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.4E-351152IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008474.3E-12110151IPR001471AP2/ERF domain
CDDcd000182.02E-20110151No hitNo description
Gene3DG3DSA:3.30.730.105.0E-21111151IPR001471AP2/ERF domain
PROSITE profilePS5103219.427111152IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-15111151IPR016177DNA-binding domain
SMARTSM003802.6E-11111152IPR001471AP2/ERF domain
PRINTSPR003671.2E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.2E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDSVKFSEHR TVTVVKSSQS RKHDLRVVRI YVTDDEATDS SSGEDEESRE SSASAMLRVK  60
RHVSEVRFEE YCPNTRPDVR NSKLKPANRN GSRPCKSTAA AAEQYFPNGP KFRGVRRRPW  120
GRWAAEIRDP FRRTRVWLGT FDTAEQAALM YX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-13109151346ATERF1
3gcc_A3e-13109151346ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888826.12e-40ethylene-responsive transcription factor CRF4
RefseqXP_015889374.12e-40ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2P5AC856e-53A0A2P5AC85_PARAD; AP2/ERF transcription factor
STRINGXP_010109447.18e-38(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-23cytokinin response factor 2