PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 457aa MW: 50768.3 Da PI: 7.9086 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qky PK08316.1 55 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKY 99 789*******************.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-16 | 49 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.297 | 50 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-10 | 52 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-17 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-13 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 55 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-11 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MVVEKQSEGM LSNNSVVAGN CITNGDAKYK SESPLKDLYE SAPKVRKPYT ITKQREKWTE 60 EEHQKFLEAL KLYGRGWRQI EEHVGTKTAV QIRSHAQKYF SKVVRGSSGS VEGCMKPVEI 120 PPPRPKRKPM HPYPRKFVES FNGTSVLNQL ERSPSPNFAA TDKGIKSPTS VLSSHGSDAV 180 GYDASDHQHK RSPSSTSCTT DMQSISLSPS DKENCYLMSN SSAEEKIPGN HLSSQSNVEN 240 VLSVKIEPGC KDTAHNNKED KLSTSTSFKL FGRTVLLSDL EKESHCSTDD SEALKTDEGQ 300 KLDTNLSLGG FGFASNCSPL ESSSPSNQTE QQKESSNIVK LNGDAQMLWW SMPQFPFHYQ 360 AAYNPSTGPT STEMEEKEIK KERSCTDSNE GSSSGVETVG NRNIEAFNSF SQEPHRKASV 420 EHCNSRKGFV PYKRCLAERD NHSTATSDRE RRKVRVC |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023521.1 | 1e-172 | protein REVEILLE 7 isoform X1 | ||||
TrEMBL | A0A2P5CQF6 | 0.0 | A0A2P5CQF6_TREOI; GAMYB transcription factor | ||||
STRING | XP_010099677.1 | 1e-171 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7313 | 32 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 3e-49 | MYB_related family protein |